PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG015004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YB | ||||||||
Protein Properties | Length: 176aa MW: 19853.2 Da PI: 6.784 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.2 | 1.2e-53 | 31 | 126 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lP akisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wala+lGf+dy eplk yl kyre+ege+ CCG015004.1 31 KEQDRLLPIANVGRIMKQILPPSAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALASLGFDDYSEPLKRYLYKYREVEGER 126 89********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-52 | 28 | 143 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.02E-40 | 33 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-27 | 36 | 100 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.3E-20 | 64 | 82 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 67 | 83 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 6.3E-20 | 83 | 101 | No hit | No description |
PRINTS | PR00615 | 6.3E-20 | 102 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MVDSIGNNNS DKEWLKYDFA GGSTSDDGII KEQDRLLPIA NVGRIMKQIL PPSAKISKEA 60 KETMQECVSE FISFVTGEAS DKCHKEKRKT VNGDDICWAL ASLGFDDYSE PLKRYLYKYR 120 EVEGERASHN KASNNEERDD SSKYRGESIL KATVSPHTPL KLPGNIDRSN SLSRRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 6e-44 | 30 | 121 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 6e-44 | 30 | 121 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033579.1 | 1e-129 | PREDICTED: nuclear transcription factor Y subunit B-5 | ||||
Swissprot | O82248 | 5e-59 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | B9I9U4 | 1e-126 | B9I9U4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s12710.1 | 1e-126 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 2e-61 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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