PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 176aa    MW: 19853.2 Da    PI: 6.784
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015004.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.21.2e-5331126297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdr+lPianv+rimk++lP  akisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wala+lGf+dy eplk yl kyre+ege+
  CCG015004.1  31 KEQDRLLPIANVGRIMKQILPPSAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALASLGFDDYSEPLKRYLYKYREVEGER 126
                  89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5228143IPR009072Histone-fold
SuperFamilySSF471131.02E-4033147IPR009072Histone-fold
PfamPF008082.2E-2736100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.3E-206482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.3E-2083101No hitNo description
PRINTSPR006156.3E-20102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVDSIGNNNS DKEWLKYDFA GGSTSDDGII KEQDRLLPIA NVGRIMKQIL PPSAKISKEA  60
KETMQECVSE FISFVTGEAS DKCHKEKRKT VNGDDICWAL ASLGFDDYSE PLKRYLYKYR  120
EVEGERASHN KASNNEERDD SSKYRGESIL KATVSPHTPL KLPGNIDRSN SLSRRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4430121192Transcription factor HapC (Eurofung)
4g92_B6e-4430121192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033579.11e-129PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822485e-59NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLB9I9U41e-126B9I9U4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s12710.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-61nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]