PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014782.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 290aa    MW: 32335.1 Da    PI: 8.8076
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014782.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.81.9e-3171128260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  +++rY+eCl+NhAa++Gg ++DGCgEfmp  geeg+ +alkCaAC+CHRnFHRre + e
  CCG014782.1  71 SNTRYRECLRNHAANVGGSVYDGCGEFMPG-GEEGSLEALKCAACECHRNFHRREIDGE 128
                  5789*************************9.999*********************8865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2273126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2873125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.3E-2874125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.17175124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-18211281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-30218282IPR009057Homeodomain-like
TIGRFAMsTIGR015653.7E-29222279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEMRGLENDI RTSVPSSYSH QSSGLEGRNG NHNGTTVLTY TQTLDHQRQP SRSPNPDRLA  60
IISSGPNSKT SNTRYRECLR NHAANVGGSV YDGCGEFMPG GEEGSLEALK CAACECHRNF  120
HRREIDGETQ FSPGSRRSAT MVHSLQLPPP LPSPAILHHH LHHHQRYSMG LHTSPNTANM  180
VQPMSVAFGG VSGGTESSSE DLNPFQSNAD GVPPPPPYVM SKKRFRTKFT PEQKDKMMEF  240
ADKVGWRINK QDEEEVQKFC AEVGVRRQVF KVWMHNNKNL KKQPQPTSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-242212791674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004015.10.0PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_011007478.10.0PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9FRL53e-69ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLB9H8Q90.0B9H8Q9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.15e-53homeobox protein 24