PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014737.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-X1
Protein Properties Length: 1106aa    MW: 119679 Da    PI: 7.8415
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014737.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.62.2e-07410427118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+C++ CH G+C pC
  CCG014737.1 410 CGMHQCKEVCHSGDCAPC 427
                  ****************** PP
2zf-NF-X118.64e-06506524119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG+H+C++lCH G CppC 
  CCG014737.1 506 CGQHSCESLCHSGHCPPCL 524
                  ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.36E-6110181No hitNo description
PROSITE profilePS500168.769118179IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590121176IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.376121177IPR001841Zinc finger, RING-type
CDDcd060085.14E-5210271No hitNo description
SMARTSM004380.039233251IPR000967Zinc finger, NF-X1-type
PfamPF014221.8235250IPR000967Zinc finger, NF-X1-type
CDDcd060082.89E-11278326No hitNo description
SMARTSM004380.012288307IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033290305IPR000967Zinc finger, NF-X1-type
CDDcd060081.78E-9342387No hitNo description
PfamPF014220.0097352369IPR000967Zinc finger, NF-X1-type
SMARTSM004380.007352371IPR000967Zinc finger, NF-X1-type
CDDcd060087.39E-13400447No hitNo description
PfamPF014223.1E-6410427IPR000967Zinc finger, NF-X1-type
SMARTSM004383.4E-5410429IPR000967Zinc finger, NF-X1-type
PfamPF0142218468479IPR000967Zinc finger, NF-X1-type
SMARTSM00438170468502IPR000967Zinc finger, NF-X1-type
CDDcd060086.39E-9496539No hitNo description
PfamPF014229.9E-5506523IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4506525IPR000967Zinc finger, NF-X1-type
CDDcd060082.48E-5553601No hitNo description
PfamPF014225.9563580IPR000967Zinc finger, NF-X1-type
SMARTSM004380.065563581IPR000967Zinc finger, NF-X1-type
PfamPF014220.24616631IPR000967Zinc finger, NF-X1-type
SMARTSM004384.4616646IPR000967Zinc finger, NF-X1-type
CDDcd060081.89E-5644693No hitNo description
PfamPF0142264648674IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013655676IPR000967Zinc finger, NF-X1-type
PfamPF014244.6E-5787851IPR001374R3H domain
Gene3DG3DSA:3.30.70.3307.4E-5893943IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MSFQSRNDGG DYNNGSRSRF PTRQTWVPRG SNPSLPLNVD VNPNPNPPSS FSSRNNGNGG  60
HSSHGTGVAD YRYKGGVNAP RGGQMGRGKE RGVETREVKD PNLPQLAQEI QEKLVKSTVE  120
CMICYDMVRR SAPIWSCSSC FSIFHLNCIK KWARAPTSVD LIAEKNQGFN WRCPGCQSVQ  180
LTSLKDIRYV CFCGKRTDPP SDLYLTPHSC GEPCGKQLEK EVPGADGSRE GLCPHNCVLQ  240
CHPGPCPPCK AFAPPSLCPC GKKRITTRCA DRKSVLTCGQ RCDKLLECWR HRCEQICHVG  300
PCNPCQVLVN ASCFCKKNTE VVLCGDMAVK GEVKAEDGVF VCNSTCGKVL GCGNHICGET  360
CHPGDCGDCE FMPGRVKSCY CGKTSLREER NSCLDPIPTC AQICGKSLPC GMHQCKEVCH  420
SGDCAPCLVS VIQKCRCGST SRTVECYNTI SENEKFLCDK PCGRKKNCGR HRCSERCCPL  480
SNSNNQFSGD WDPHFCQMAC GKKLRCGQHS CESLCHSGHC PPCLETIFTD LTCACGRTSI  540
PPPLPCGTPP PSCQLPCSVP QPCGHPASHS CHFGDCPPCS VPVAKECVGG HVILGNIPCG  600
SRDIRCNKLC GKTRQCGLHA CGRTCHSPPC DTSPGTETSS RTSCGQTCGA PRRDCRHTCT  660
ALCHPYAPCP DVRCEFPVTI TCSCGRITAS VPCDAGGSNG GYNDTILEAS ILHKLPASLQ  720
PVESSGKKIP LGQRKFMCDD ECAKLERKRV LADAFDINPP NLEALHFGEN SSVTELIGDL  780
YRRDPKWVLA VEERCKYLVL GKSRGTTSGL KIHVFCPMLK DKRDAVRLIA ERWKLAIYSA  840
GWEPKRFIVI HAIPKSKTPS RVIGIKGTTT LSAAHPPVFD ALVDMDPRLV VSFLDLPREA  900
DISSLVLRFG GECELVWLND KNALAVFNDP ARAATAMRRL DHGSVYYGAA VVPQNCGAST  960
GSSATNAWGT AGTAKEGTIT ALKGTSWKKA VVQESGWRED SWGDEEWSGG GSADVQASAW  1020
KGKEHPISTS INRWSVLDSD KADSSSAASV RIEDPAKRVA EILSSTGLES NVSTSNISVQ  1080
TAMQPGGVSS EEDLSEVVDD WEKAYD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2168360.0AC216836.1 Populus trichocarpa clone POP013-I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003753.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2K1Y8R80.0A0A2K1Y8R8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s04070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1