PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014699.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 662aa    MW: 74691.8 Da    PI: 5.4493
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014699.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.12.7e-1092856552374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++ Aeav+ +d++ a++lL++++++++p gd  qRla+yf++AL++r+a+++se+y++l++++ +    +  l+a +lf   +P++ +s+l a 
  CCG014699.1 285 RTLLIHSAEAVAVNDHRTANELLTQIRQNSTPFGDGSQRLAHYFANALETRMAGTGSEVYATLAAKRVT---PACILKAGRLFISGCPFMIMSNLFAA 379
                  789************************************************************999998...79999********************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  + I++ +e+++r+Hii f+i +G+ Wp+L+q L++Rp+gpp lRiTg++ ++++  s+  le +g+ La+++e+++vpf++n+ +++++e+++le+L+
  CCG014699.1 380 RIIMDLAENATRLHIIHFGILYGFPWPSLIQHLSTRPGGPPVLRITGIEFSQTSyeSAAVLEDIGRYLASYCEKFNVPFNYNA-ISQKWENVQLEDLK 476
                  *************************************************99888999**************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E+++V++ ++ ++llde+vsl+ +rd+vL+l+k+++P ++++   +  +ns+ F+ rf eal yys+lfd+lea+ +re+ er++ E+e++g+e
  CCG014699.1 477 IDRDEVTVVSSLYRFQHLLDETVSLNCQRDAVLNLIKRINPAIFIHGIINGAYNSPFFVSRFREALFYYSSLFDMLEANTSREDPERMVFEQEVFGKE 574
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i nv++ceg +r er e++++W++r  +aG++++pl+e ++kq++  ++  + + + ++++ +++++gWk+r L+++S+W+
  CCG014699.1 575 ILNVISCEGWDRLERPEKYKQWQARKVRAGLRQLPLKEGIMKQVREQVKSSYHKDFLMDQDGQWMLQGWKGRILFAISCWK 655
                  ****************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.541258635IPR005202Transcription factor GRAS
PfamPF035149.4E-107285655IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MNPVFEDPAA NAVLKYISQI LMEEESEEQT FSSRDFSLWA AERPFSDILA PKGSSSDGEV  60
SDPSQTINNV STYCCDVYGC NSSMKANNIV ESSSICDGGP PPVNYTVPFS LQVNPPPFFP  120
RSGFRTFPGP VDSVNVALNE RQLEVLFRGG TDETWKFHQQ PKEMVVDFAN NRMTPVMAIT  180
KESNLDLSVC ELMERQNHYR VETELEPRIN KHTSICAEEP EQFGMFARVF PSTGGDGEPA  240
GFNLNEAFQS GPGMISYLKE QSRGSNDGVI CRKSQVSSRE LVDMRTLLIH SAEAVAVNDH  300
RTANELLTQI RQNSTPFGDG SQRLAHYFAN ALETRMAGTG SEVYATLAAK RVTPACILKA  360
GRLFISGCPF MIMSNLFAAR IIMDLAENAT RLHIIHFGIL YGFPWPSLIQ HLSTRPGGPP  420
VLRITGIEFS QTSYESAAVL EDIGRYLASY CEKFNVPFNY NAISQKWENV QLEDLKIDRD  480
EVTVVSSLYR FQHLLDETVS LNCQRDAVLN LIKRINPAIF IHGIINGAYN SPFFVSRFRE  540
ALFYYSSLFD MLEANTSRED PERMVFEQEV FGKEILNVIS CEGWDRLERP EKYKQWQARK  600
VRAGLRQLPL KEGIMKQVRE QVKSSYHKDF LMDQDGQWML QGWKGRILFA ISCWKSASVG  660
LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4529265426377Protein SCARECROW
5b3h_D1e-4529265426377Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2725010.0GU272501.1 Populus balsamifera isolate FRE01 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725020.0GU272502.1 Populus balsamifera isolate FRE01 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725030.0GU272503.1 Populus balsamifera isolate GAL12 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725040.0GU272504.1 Populus balsamifera isolate GAL12 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725050.0GU272505.1 Populus balsamifera isolate GIL14 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725060.0GU272506.1 Populus balsamifera isolate GIL14 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725070.0GU272507.1 Populus balsamifera isolate GPR02 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725080.0GU272508.1 Populus balsamifera isolate GPR02 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725090.0GU272509.1 Populus balsamifera isolate INU03 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725100.0GU272510.1 Populus balsamifera isolate INU03 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725110.0GU272511.1 Populus balsamifera isolate KUU07 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725120.0GU272512.1 Populus balsamifera isolate KUU07 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725130.0GU272513.1 Populus balsamifera isolate MGR10 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725140.0GU272514.1 Populus balsamifera isolate MGR10 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725150.0GU272515.1 Populus balsamifera isolate POR11 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725160.0GU272516.1 Populus balsamifera isolate POR11 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015501.10.0PREDICTED: scarecrow-like protein 14
TrEMBLB9GJL80.0B9GJL8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-167SCARECROW-like 14