PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG014556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 479aa MW: 50708.7 Da PI: 8.5737 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2.1e-11 | 51 | 74 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C++++rtG+C yG+rC+++H++ CCG014556.1 51 QDCMYYLRTGWCGYGARCRYNHPR 74 68********************96 PP | |||||||
2 | zf-CCCH | 41.3 | 2.5e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtGtCk+G++Ck++H++ CCG014556.1 96 QPLCQYYMRTGTCKFGASCKYHHPK 120 79*********************96 PP | |||||||
3 | zf-CCCH | 35.6 | 1.6e-11 | 140 | 166 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++ +tG+Ck+G++CkF+H++ CCG014556.1 140 PGERECTYYIKTGQCKFGATCKFHHPQ 166 5789*********************97 PP | |||||||
4 | zf-CCCH | 28.4 | 2.9e-09 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG Ck+ ++C+++H+p CCG014556.1 302 PGQPECQYYIKTGDCKFRSSCRYHHPP 328 5789*********************97 PP | |||||||
5 | zf-CCCH | 29.1 | 1.7e-09 | 351 | 374 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+++ + G+Ck+G+ CkF H++ CCG014556.1 351 PTCSHYTQRGQCKFGPACKFDHPM 374 78********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.493 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-9 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-5 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.089 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-7 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-11 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.934 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-8 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-5 | 305 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-6 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-7 | 351 | 374 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 351 | 377 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 353 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MDRYGRAQEG SQSDPALEWT GSGPETGLEE GVWQLGLGET ESVYPERPNE QDCMYYLRTG 60 WCGYGARCRY NHPRDRSAVL GAPRAGGAEY PERVGQPLCQ YYMRTGTCKF GASCKYHHPK 120 QGGGSASPVS LNYYGYPLRP GERECTYYIK TGQCKFGATC KFHHPQPGNI QIPAQSLAPQ 180 IAPVPSPTLY PSVQSPSVPS SQQYGVMVAR PPLLPGSYVQ GPYGPVLLSP SVVPYPSWNP 240 YPAPVSPVAS PNTQPAVGSG SVYGLSALSP SAPAYTGAFQ SIPPATGPSS STQKEHLFPE 300 RPGQPECQYY IKTGDCKFRS SCRYHHPPEL VVSKTNVVLS PIGLPLRPGA PTCSHYTQRG 360 QCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYLVGSSI GTLAPSSSSS DLRSKPISGP 420 SKDSSSTRLS SSTSIPSGSV GSIFSKSGPA PHLNVQQSGW SSGPSTNSSG SSSGTCTSI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182669 | 0.0 | AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018690.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q6NPN3 | 1e-164 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | B9N500 | 0.0 | B9N500_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_006608m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-137 | C3H family protein |
Publications ? help Back to Top | |||
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