PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014491.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 552aa    MW: 61763.7 Da    PI: 6.3136
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014491.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.99.6e-28311365156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++WtpeLH++Fv+ave+L G ++A+P++ile+mkv+gLt+++v+SHLQkYR++
  CCG014491.1 311 KMKVDWTPELHKKFVQAVEKL-GVDQAIPSRILEVMKVEGLTRHNVASHLQKYRMH 365
                  5689*****************.********************************96 PP
2Response_reg27.81.3e-10201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++   +  +++ le  +y +v ++ + +eal  + ++   +++ ++ ++++++  ++ +k +++++ +lp i+ ++ +  +++ +++ +Ga 
   CCG014491.1  20 VLLLDEDSMSAAEIKSKLEAMDY-IVYTFCNETEALSAISNEPgsFHVAIVEVSLSNS--SRSFKFLETSK-DLPTIMTSSIDCLNTMMKCIALGAV 112
                   79999999999************.***************999989*******999984..45566665655.899**9999999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
   CCG014491.1 113 EFLRKPLSEDKLRN 126
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.2E-1616168No hitNo description
SuperFamilySSF521721.85E-1516134IPR011006CheY-like superfamily
SMARTSM004480.002718128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011023.81219132IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.61E-921131No hitNo description
PROSITE profilePS5129415.19308367IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-26309368IPR009057Homeodomain-like
SuperFamilySSF466892.39E-18310368IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-25311365IPR006447Myb domain, plants
PfamPF002491.3E-8314363IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MVCTTNDLSA WKDFPKGLRV LLLDEDSMSA AEIKSKLEAM DYIVYTFCNE TEALSAISNE  60
PGSFHVAIVE VSLSNSSRSF KFLETSKDLP TIMTSSIDCL NTMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAGG SVQSKSLKPV KDSVVSMLEL NDGLEENENE NMEKTENVSL  180
AQESNEQQSP ASDRYPAPST PQLKQGERLL DDGYCQDHIN CLIEKESVEQ EGDSKSVETT  240
CAMTEETLQA RDPQSFTENV IKEEDNSTDG VKRENNMCPN SQNKDTLNHS NGAEKASSLH  300
NSHGTRANRK KMKVDWTPEL HKKFVQAVEK LGVDQAIPSR ILEVMKVEGL TRHNVASHLQ  360
KYRMHRRHIL PKEDERQWTQ HRDQVQRSYY QHKPIIAYPP YHCNHALPPG PVYPMWGATG  420
SHTAGVHMWG PPGYSPWPPT ESCHWKPYPG MHADAWGCPV MPPYSPYSSI PHYASGFQSA  480
SMVNNSCGMP QKMFDLQPAE EVIDKVVKEA INKPWLPLPL GLKPPSADSV LAELSRQGVS  540
SIPPRINGSN SI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16316365655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0289200.0CT028920.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018627.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_011018628.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_011018629.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-150APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2K2BXM60.0A0A2K2BXM6_POPTR; ARR-B family protein
STRINGPOPTR_0001s02910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-148ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]