PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG014470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LSD | ||||||||
Protein Properties | Length: 176aa MW: 18443.8 Da PI: 8.4281 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.9 | 1.7e-13 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V CCG014470.1 44 CSGCRNLLLYPVGATSVCCAVCNAV 68 ************************9 PP | |||||||
2 | zf-LSD1 | 46.4 | 6.5e-15 | 83 | 107 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV CCG014470.1 83 CGGCHTLLMYIRGATSVQCSCCHTV 107 ************************9 PP | |||||||
3 | zf-LSD1 | 37.3 | 4.4e-12 | 121 | 145 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V CCG014470.1 121 CGSCRMLLMYRYGARSVKCAVCTFV 145 **********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-12 | 41 | 71 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-10 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 9.77E-5 | 58 | 126 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 1.2E-14 | 80 | 109 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-12 | 83 | 107 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.5E-12 | 118 | 146 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.0E-11 | 121 | 145 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MPVPLAPYPT PPAPYAPPAP APAPPPPPPP PLPPANGAQS QLVCSGCRNL LLYPVGATSV 60 CCAVCNAVTA VPPPGTEMAQ LVCGGCHTLL MYIRGATSVQ CSCCHTVNLA LEANQVAHVN 120 CGSCRMLLMY RYGARSVKCA VCTFVTPVGM AFIGVPYYKP GKTGNYISRY NQMHQI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232247 | 1e-113 | CU232247.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018590.1 | 2e-99 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_011018591.1 | 2e-99 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_011018592.1 | 2e-99 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_011018593.1 | 2e-99 | PREDICTED: protein LOL1-like | ||||
Swissprot | Q93ZB1 | 1e-73 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2G5CN71 | 1e-80 | A0A2G5CN71_AQUCA; Uncharacterized protein | ||||
TrEMBL | A0A3P6FCG5 | 2e-80 | A0A3P6FCG5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g087050.1 | 1e-80 | (Brassica oleracea) | ||||
STRING | cassava4.1_018557m | 1e-80 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-58 | lsd one like 1 |
Publications ? help Back to Top | |||
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