PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG014424.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 510aa MW: 55957.2 Da PI: 4.5427 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.3 | 3.8e-36 | 37 | 128 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+e++ ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i CCG014424.1 37 FLSKTYDMVDDPETDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRTIS 124 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k CCG014424.1 125 RRKP 128 *986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.7E-40 | 28 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.03E-36 | 32 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.8E-63 | 33 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-20 | 37 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.6E-32 | 37 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-20 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 76 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-20 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 510 aa Download sequence Send to blast |
MDGINTTASG GDTSTSGGGA QAAPVPMASQ SNSPPPFLSK TYDMVDDPET DAVVSWSSTN 60 NSFVVWNPPE FARDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL 120 RTISRRKPAH GHANQQPQQT RGQNSTVGAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR 180 QQQQSTDSQL QAMVQRLQGM EQRQQQMMSF LAKAMQSPGF LAQFVQQQNE SNRRITEANK 240 KRRLKQEGVS ENEGSSAPDG QIVKYQPQMN EAAKAMLRQV MKMDAPSRLE SYDNNLDGFL 300 IGNGSPSSSA KDNGSSSSRM SGVTLQEVPA ASGISGHGPM AAISEIQSSP QIASSEKATA 360 SQFPESILVG GQGAPSIPIP QADIIMPQVS QKPEMVPEII ADIPGEDYME PETSSDVFLD 420 PASLGINDTI PIDIDNISPD PDIDALLDNS SFWDDLLAQS PVPEDIESSS MEGKANGNDV 480 HQIINEWDKA QHMDQLTEQM GLLSSDRKQL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-28 | 19 | 126 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-28 | 19 | 126 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-28 | 19 | 126 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 238 | 245 | NKKRRLKQ |
2 | 239 | 244 | KKRRLK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP013976 | 0.0 | KP013976.1 Populus simonii heat shock transcription factor A1c2 (HsfA1c2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018512.1 | 0.0 | PREDICTED: heat stress transcription factor A-1d isoform X1 | ||||
Swissprot | Q9LQM7 | 1e-180 | HFA1D_ARATH; Heat stress transcription factor A-1d | ||||
TrEMBL | A0A3N7EEZ4 | 0.0 | A0A3N7EEZ4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s09370.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1843 | 31 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-145 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
---|---|---|---|
|