PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014424.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 510aa    MW: 55957.2 Da    PI: 4.5427
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014424.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.8e-36371282102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+e++ ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
   CCG014424.1  37 FLSKTYDMVDDPETDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRTIS 124
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   CCG014424.1 125 RRKP 128
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-4028120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.03E-3632126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-6333126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3237126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDGINTTASG GDTSTSGGGA QAAPVPMASQ SNSPPPFLSK TYDMVDDPET DAVVSWSSTN  60
NSFVVWNPPE FARDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL  120
RTISRRKPAH GHANQQPQQT RGQNSTVGAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR  180
QQQQSTDSQL QAMVQRLQGM EQRQQQMMSF LAKAMQSPGF LAQFVQQQNE SNRRITEANK  240
KRRLKQEGVS ENEGSSAPDG QIVKYQPQMN EAAKAMLRQV MKMDAPSRLE SYDNNLDGFL  300
IGNGSPSSSA KDNGSSSSRM SGVTLQEVPA ASGISGHGPM AAISEIQSSP QIASSEKATA  360
SQFPESILVG GQGAPSIPIP QADIIMPQVS QKPEMVPEII ADIPGEDYME PETSSDVFLD  420
PASLGINDTI PIDIDNISPD PDIDALLDNS SFWDDLLAQS PVPEDIESSS MEGKANGNDV  480
HQIINEWDKA QHMDQLTEQM GLLSSDRKQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-281912610129Heat shock factor protein 1
5d5v_B3e-281912610129Heat shock factor protein 1
5d5v_D3e-281912610129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238245NKKRRLKQ
2239244KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139760.0KP013976.1 Populus simonii heat shock transcription factor A1c2 (HsfA1c2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018512.10.0PREDICTED: heat stress transcription factor A-1d isoform X1
SwissprotQ9LQM71e-180HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A3N7EEZ40.0A0A3N7EEZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-145heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]