PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG014283.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 766aa MW: 84351.2 Da PI: 6.5757

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG014283.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	310	5.6e-95	404	765	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L ++Ae v +g+++ aq +Larl+++ p+g+p++R+a+yf+eAL+ l+ + s+ + a pp++ ++ +++ +++a+k++sevsP+++f ++t+N CCG014283.1 404 LDQLCKAAELVGTGNFSHAQGILARLNQQLFPTGKPLHRAAFYFKEALQLLLLMN-SNSVTAPPPRSPTPFDVIFKMSAYKVLSEVSPLIQFVNFTCN 500 679***********************************************985.5555577888888899********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dleleeLr 195 qa+leav+ ++ +Hi+Dfdi+ G+QW++++q+L R++g sl+ T+++sp++++ el ++++L++fA+e+g++fe +v+ ++le + +l +r CCG014283.1 501 QALLEAVDDADSIHIVDFDIGFGAQWASFMQELP-RNRGVRSLKTTAFASPSTHHPVELGLMRDNLTQFANEIGLSFELDVINFDSLEqnCYSLPFFR 597 *****************************6.78999*************************************97775551155777789 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++Ea++Vn+ + + ++ +l+s +L+++k+lsPk+vv ++ +d+++ +F +++l+al+ y+ l++sl+a +++++ +k+Er+ll+++ CCG014283.1 598 TNENEAVVVNFPIWCSSN--QPSALPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFSQHILHALQSYVHLLESLDAV-NATTDDVNKIERFLLQPR 688 999*****955544..4555555....*****************************************887.688999******** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i++ v + ++ + ++ +W+ + ++GF+pv++s+++++qa++++++++++g++ve++++ lvl W++r+L+s+SaWr CCG014283.1 689 IESTVLGRLRA----TDKMPNWKTIFASVGFSPVTFSNFTEAQAECVVKRTPVRGFHVEKQQALLVLFWQRRELMSASAWR 765 **99988....8999***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.067	377	745	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-92	404	765	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence Send to blast
MPFPLQAKGG VDIAGFASIC SQQETWTHRQ QQQQQQQQRQ QPLQVNSFAS KEPSSVLHMR 60 RSQSPPTSVS TLSSSSNGGA GGNITNITAT DKAVNPVSNE RKDEWATELQ PIPSGLEFVS 120 SGARCGLGLE DWENMLSEPS QEQSFMRWIA GDVDDTQFGL KQLLQSGNNQ LEFDDNADAG 180 AGGGGLGIVD QGHGFESLSG IPCGVSSIGT NLAPFPGPGV SNVGSGLVAS GYFSGLVNCK 240 NVGFGNNSSV QSPVFSSPSN SVSLPLSLPP GMVSHHNQQQ QIEASEEKPH ILDPQVLMNQ 300 QHSHNPQAQN PNLFLPLPFS HQENRPLHSQ LKRHNSGGID PISHVIPKPP FSVPGQEFLL 360 RKHQQQQLGF PQGVQFLHQQ LQQKPLMVKK EDLGVQQQQQ HALLDQLCKA AELVGTGNFS 420 HAQGILARLN QQLFPTGKPL HRAAFYFKEA LQLLLLMNSN SVTAPPPRSP TPFDVIFKMS 480 AYKVLSEVSP LIQFVNFTCN QALLEAVDDA DSIHIVDFDI GFGAQWASFM QELPRNRGVR 540 SLKTTAFASP STHHPVELGL MRDNLTQFAN EIGLSFELDV INFDSLEQNC YSLPFFRTNE 600 NEAVVVNFPI WCSSNQPSAL PSLLRFIKQL SPKIVVSLDR GCDRSDLPFS QHILHALQSY 660 VHLLESLDAV NATTDDVNKI ERFLLQPRIE STVLGRLRAT DKMPNWKTIF ASVGFSPVTF 720 SNFTEAQAEC VVKRTPVRGF HVEKQQALLV LFWQRRELMS ASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence Send to blast

MPFPLQAKGG VDIAGFASIC SQQETWTHRQ QQQQQQQQRQ QPLQVNSFAS KEPSSVLHMR  60
RSQSPPTSVS TLSSSSNGGA GGNITNITAT DKAVNPVSNE RKDEWATELQ PIPSGLEFVS  120
SGARCGLGLE DWENMLSEPS QEQSFMRWIA GDVDDTQFGL KQLLQSGNNQ LEFDDNADAG  180
AGGGGLGIVD QGHGFESLSG IPCGVSSIGT NLAPFPGPGV SNVGSGLVAS GYFSGLVNCK  240
NVGFGNNSSV QSPVFSSPSN SVSLPLSLPP GMVSHHNQQQ QIEASEEKPH ILDPQVLMNQ  300
QHSHNPQAQN PNLFLPLPFS HQENRPLHSQ LKRHNSGGID PISHVIPKPP FSVPGQEFLL  360
RKHQQQQLGF PQGVQFLHQQ LQQKPLMVKK EDLGVQQQQQ HALLDQLCKA AELVGTGNFS  420
HAQGILARLN QQLFPTGKPL HRAAFYFKEA LQLLLLMNSN SVTAPPPRSP TPFDVIFKMS  480
AYKVLSEVSP LIQFVNFTCN QALLEAVDDA DSIHIVDFDI GFGAQWASFM QELPRNRGVR  540
SLKTTAFASP STHHPVELGL MRDNLTQFAN EIGLSFELDV INFDSLEQNC YSLPFFRTNE  600
NEAVVVNFPI WCSSNQPSAL PSLLRFIKQL SPKIVVSLDR GCDRSDLPFS QHILHALQSY  660
VHLLESLDAV NATTDDVNKI ERFLLQPRIE STVLGRLRAT DKMPNWKTIF ASVGFSPVTF  720
SNFTEAQAEC VVKRTPVRGF HVEKQQALLV LFWQRRELMS ASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-31	422	765	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018300.1	0.0	PREDICTED: scarecrow-like protein 27 isoform X1
TrEMBL	A0A2K2B593	0.0	A0A2K2B593_POPTR; Uncharacterized protein
STRING	POPTR_0001s00480.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-119	GRAS family protein