PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014163.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29175.1 Da    PI: 8.4538
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014163.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-261059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n++ rqvtfskRr g+lKKA+EL +LCdaev v+ifsstgkly++ss
  CCG014163.2 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSS 59
                 8***********************************************96 PP
2K-box81.42.2e-2780170898
        K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   + +++ + +q+e a L+++++nLq+++R+++Ge+L+ Ls+k+Lq+Le+qLe sl+ +  kK+++l+++i el +k + +++en++L kk 
  CCG014163.2  80 GNPTSELKFWQRETAMLRQQLQNLQENHRQMMGEELSGLSVKDLQNLENQLEMSLRGVHMKKDQILMDEILELNRKGNLIHQENMELYKKA 170
                  3678899********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.226161IPR002100Transcription factor, MADS-box
CDDcd002653.25E-46278No hitNo description
SuperFamilySSF554552.22E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2684169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.64986180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGKIEIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVMIFSS TGKLYDFSST  60
SMKSVIERYN KSKEEHHQMG NPTSELKFWQ RETAMLRQQL QNLQENHRQM MGEELSGLSV  120
KDLQNLENQL EMSLRGVHMK KDQILMDEIL ELNRKGNLIH QENMELYKKA NLICHENQEL  180
YKKVYGNREV NGANRNSLLT NGLGMGEESH VPVHLQLSQP QQQNYDTPAR ATKLGYNFIH  240
TTTDYNCISE EVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21181181MEF2C
5f28_B2e-21181181MEF2C
5f28_C2e-21181181MEF2C
5f28_D2e-21181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003638.11e-174PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotA2RVQ51e-111AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A3N7EYJ91e-165A0A3N7EYJ9_POPTR; Uncharacterized protein
STRINGXP_002527350.11e-145(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-114AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]