PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013954.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 422aa MW: 48270.2 Da PI: 4.1978

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013954.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.6	4.4e-15	188	272	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + ++++l+ W+ev++k+ ++ ++ers +qC+++++ l+k+yk +k ++ s++s +++yf++l+ CCG013954.2 188 WTERETFVLLDAWGDKFLQRGKKSLRSDEWQEVAEKVsEKSKIERSDTQCRNRLDTLKKKYKIEKIKLAEGGSGAS-KWVYFKKLD 272 ***********************************555688**********************9977776.9****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-21	187	272	No hit	No description
PROSITE profile	PS50090	6.226	188	245	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MDDTEDDARY PPNPYGDNNQ QSYGSNRHKL LVGNAMYLRE VDDQYSIDED EIADEEEEEE 60 EDDDEHELGV EDGENNQKNG LHYGGKDVDV DEEEEEEGVD DEEDEDDNQK YNRRIEEDED 120 DNEKYNMRID NDDDDDDDDG DIERHPKKLK LKSLVSSYEF APRVPAPPVA VPAGPKPSVG 180 GRNPLTDWTE RETFVLLDAW GDKFLQRGKK SLRSDEWQEV AEKVSEKSKI ERSDTQCRNR 240 LDTLKKKYKI EKIKLAEGGS GASKWVYFKK LDILMSTSAQ QGGLSCGLDS GEYVFMNPNA 300 YSNHANGLDG MRDSPGNSES AHDEDDSDGL PPKKRRLGRE SRNCNEQSSF GLLADSIQKF 360 SKIYEKIESS KRQQMLELEK MKMDFERDLE MEKRQIIERA KAEIAKIHQD SEDEDTMSAS 420 SA

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MDDTEDDARY PPNPYGDNNQ QSYGSNRHKL LVGNAMYLRE VDDQYSIDED EIADEEEEEE  60
EDDDEHELGV EDGENNQKNG LHYGGKDVDV DEEEEEEGVD DEEDEDDNQK YNRRIEEDED  120
DNEKYNMRID NDDDDDDDDG DIERHPKKLK LKSLVSSYEF APRVPAPPVA VPAGPKPSVG  180
GRNPLTDWTE RETFVLLDAW GDKFLQRGKK SLRSDEWQEV AEKVSEKSKI ERSDTQCRNR  240
LDTLKKKYKI EKIKLAEGGS GASKWVYFKK LDILMSTSAQ QGGLSCGLDS GEYVFMNPNA  300
YSNHANGLDG MRDSPGNSES AHDEDDSDGL PPKKRRLGRE SRNCNEQSSF GLLADSIQKF  360
SKIYEKIESS KRQQMLELEK MKMDFERDLE MEKRQIIERA KAEIAKIHQD SEDEDTMSAS  420
SA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU224787	0.0	CU224787.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000835.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A2K2B214	0.0	A0A2K2B214_POPTR; Uncharacterized protein
STRING	POPTR_0003s05470.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-62	Trihelix family protein