PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013896.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 501aa    MW: 55805.8 Da    PI: 5.1253
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013896.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1101.8e-341612522102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk++e++ed+e++e++sw +n +sfvv+d++ef+k +LpkyFkh+nf+SF+RQLn+YgF+k++ ++         weF+++ F+  kk+ll++ik
   CCG013896.1 161 FLKKTFEMVEDPETDETVSWGKNRDSFVVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFHGAKKHLLKTIK 248
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   CCG013896.1 249 RRSR 252
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-33157250IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-54157250IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-36157250IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-18161184IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-30161250IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-18199211IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340200224IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-18212224IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MVFPDAGDFF GYALAGVPSA SFSATAMLPK LILDDDHPLT NAIKSEKDHK AGQETNMPPL  60
HDTACCGGGG GPSSPSSSSM NAREMRKAAA VLEVEEEKRI KATAVTVKEE DDDGVDSLNE  120
LKGGGGGGNN KNNNGISSSS CSSVDLPKPM EGLHEAGPPP FLKKTFEMVE DPETDETVSW  180
GKNRDSFVVW DSHEFSKILL PKYFKHNNFS SFIRQLNTYG FRKIDPDRWE FANEGFHGAK  240
KHLLKTIKRR SRYNKQQSGA VTGVNDSTKP RLEAELENLK DDQDVLRLEI LKIRQQQQES  300
QTQLSAVEER IQAAECKQLQ MFIFFTKAAR NPGFIQQLIQ KRKQRGKLDG IEFRKKRRLL  360
QTHLPESFPA AVDTNQSVHF KIHAQEQLAT MQTEITEILT EDVETSQMLK VFPAPMSDGF  420
CSPILQDHNA NIMCETSTQD MSSAYNLMSE KLLDDGSVIE DLVDEEVDVN DSKLYLELQD  480
LIGMPRMWGG FATELVGHTA G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-2214225010129Heat shock factor protein 1
5d5v_B8e-2214225010129Heat shock factor protein 1
5d5v_D8e-2214225010129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243249LKTIKRR
2340357KRKQRGKLDGIEFRKKRR
3342355KQRGKLDGIEFRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140030.0KP014003.1 Populus simonii heat shock transcription factor A9 (HsfA9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003333.10.0PREDICTED: heat shock factor protein HSF30-like
TrEMBLA0A3N7F4G60.0A0A3N7F4G6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-78heat shock transcription factor A2