PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013895.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 927aa    MW: 101572 Da    PI: 8.5835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013895.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.44e-06486507426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++Cr+f++ G C+ G +CkF+H+
  CCG013895.1 486 SPCRHFLK-GRCREGQKCKFSHD 507
                  79******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.76482509IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038483508IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5484507IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4487507IPR000571Zinc finger, CCCH-type
SMARTSM003560.038511537IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695511538IPR000571Zinc finger, CCCH-type
SMARTSM003560.41539563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5540565IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4541564IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.502541564IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MAETPLFTFS PHRKSHLKSQ TYRTLVRILS HPQLCQFVPP PSGNGGDGGP HVLGNQVCSR  60
HVELCHESLL DKNGQERGFS DTQAVINEVE NIMGIEEDEN LVIDHTVCGT GLQDRDLIQA  120
QHLLIDELEH LMKGNVELVC HNNSGPVTNR NRIAAGDVVA VSNNQDEHSE RHPVVIKECK  180
GVGQLQLDEK TLCQNNKTSS EVSKPVDNCE ESSLSRTNGL EVNNEMQQKE IQSDKSVCAD  240
ATMVYPPEDG EIEEREVSGE FEVDDGSVDI FSEDAVAPQE KKVDEKQASE TIIDKNRLPI  300
NEKNEANKKD SWFSSSMACT VENTKDRREV EAQQRFSSEM ACKRKVVTYE DPILAEEGVW  360
CKKQKKCHGF REQNEGSAAK DQKRDSRVKE QKKRNVANDS VGCPVVCPNN LASFTENSDQ  420
TASANQGIAS KEKDAGLCNK KKRGPPSKEK KAKKKEKERK KRAEKNRQLG VKRMKLLPVL  480
NRKPVSPCRH FLKGRCREGQ KCKFSHDAIP LTKSEPCHHF ARHKCMKGDN CPYDHQLSKY  540
PCTNYVSKGY CIRGESCMFS HKEDLSSTSN ISNVCTPKVK PPSLPSTSNS RRQLDISGTS  600
NQTAKASPDS TGVISDDRRT ALNVAKTVQN LPALVPKGIS FLSGGKKSMV ESSPKTSSSS  660
LKSNVFVKVG NQIDQCASVT IQNCNEIPKK IPSVVAPKGI NFLSFGKAPL DKCSSAMKLK  720
SLATNQGNGV NLFSSKNFSM HEEACSSSNK DNSVLIGKET HRSVSNMAHG LSKMLQKTEP  780
TAFQDASTDS FRRNQQVSLP LSSGSGVHAS VQESKIASNK HIELSALQGR LPASPLGSGQ  840
SSDQLAHACL KNKPISAQKA LMSTLAFATK VESLMKMNHS TGGAFAVSSM VSKESRDSTT  900
PRGLQIDSEK ASKVLDFLSG IGGETKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440461KKRGPPSKEKKAKKKEKERKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003332.10.0PREDICTED: uncharacterized protein LOC105110105
TrEMBLB9HDY40.0B9HDY4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323