PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013607.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 686aa MW: 77837.9 Da PI: 6.5056

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013607.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	146.6	2.3e-45	127	407	89	374
GRAS 89 PilkfshltaNqaIleavege..ervHiiDfdisqG.lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 P+ kf+ +t aI + + ++ +r+HiiDf+i W +L+++L ++ +g s+ iT +++ + sk++++ ++ A +++++ l++ CCG013607.1 127 PFCKFAGITSKYAIADHALNSgnKRLHIIDFSIIFYfWLWNSLIKELKEQYGGLQSVLITSIAP--KLSKHAYHLRRNGVWPTAGNVELRQ----LTC 218 9************98765555*****9765167*********************..4477777777777788888777652....233 PP GRAS 184 krledl..eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 ++ +d+ l++Lr k+ +E ++V++ + lh+ll++++++e+ vL+ vk+l ++++v+veqea++ns+++ er+ +++++y +f+sle+ CCG013607.1 219 NSPDDIvnCLSKLRRKSkDEIVVVSWNFTLHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPDLSERLEQSFQCYP-VFESLEKMC--- 308 322222223699988888********************....*********************************96.8*994... PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq..aklllrkvk...sdgyrveeesgslvlgWkdrpLvsvS 371 + ++ +++++r+i nvvaceg +r+er e++++W++rl++aGF pvp + ++ k+ k+l + ++ ++++ +ee++g +vl ++ p+ ++S CCG013607.1 309 --KFPVLWEMYFRRQIGNVVACEGVDRVERIESFAQWQNRLSRAGFYPVPQKADEFKEdlQKCLKEDYPpyyVEEFGIEEKEGHFVLLRHGFPVAAAS 404 ..666777888**********************************98765544322677777764334899******************* PP GRAS 372 aWr 374 +W+ CCG013607.1 405 VWK 407 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.524	127	382	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-43	127	407	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MKVFLSVFFS GREQTKVELT FLHQRSTQKC HGQRRPGNPS NHKDCRFPFN QNEDVPPPLQ 60 SSHLSLSSLP SLSSPTLAFS ATPASSILLS FVAIYCFGCA LSIKKLLCGR VVMLLALQGQ 120 AASIYEPFCK FAGITSKYAI ADHALNSGNK RLHIIDFSII FYFWLWNSLI KELKEQYGGL 180 QSVLITSIAP KLSKHAYHLR RNGVWPTAGN VELRQLTCNS PDDIVNCLSK LRRKSKDEIV 240 VVSWNFTLHK LLAQDGAMEQ VLSKVKDLGA DIMVIVEQEA NLNSPDLSER LEQSFQCYPV 300 FESLEKMCKF PVLWEMYFRR QIGNVVACEG VDRVERIESF AQWQNRLSRA GFYPVPQKAD 360 EFKEDLQKCL KEDYPPYYVE EFGIEEKEGH FVLLRHGFPV AAASVWKVTD PPQFSGGHWK 420 NMLTGLCTMQ DTVDDSEGMA SSSESEDDEE NNSLVSIMAH RKSTQGSSMN RIAASAKLYD 480 ILEYICDLHE LPLAVTRISY YQDGNTNSKG KRILCIDDSA CYVNDCNMDG FVDEYARLRL 540 EEGQGIAGKA LQSNIHIQHD ISVLDPAEFP WDDYGIIWDI RICHAAFAIR LTSNHPCKDD 600 YVLEFVLPRF MKETSEVELL INKVLLTLQR KCLKLWKLGV RDINEARLNA TSIEAEETRE 660 LLEQGQPGTA HLNWTLYKNT GHKNQK

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MKVFLSVFFS GREQTKVELT FLHQRSTQKC HGQRRPGNPS NHKDCRFPFN QNEDVPPPLQ  60
SSHLSLSSLP SLSSPTLAFS ATPASSILLS FVAIYCFGCA LSIKKLLCGR VVMLLALQGQ  120
AASIYEPFCK FAGITSKYAI ADHALNSGNK RLHIIDFSII FYFWLWNSLI KELKEQYGGL  180
QSVLITSIAP KLSKHAYHLR RNGVWPTAGN VELRQLTCNS PDDIVNCLSK LRRKSKDEIV  240
VVSWNFTLHK LLAQDGAMEQ VLSKVKDLGA DIMVIVEQEA NLNSPDLSER LEQSFQCYPV  300
FESLEKMCKF PVLWEMYFRR QIGNVVACEG VDRVERIESF AQWQNRLSRA GFYPVPQKAD  360
EFKEDLQKCL KEDYPPYYVE EFGIEEKEGH FVLLRHGFPV AAASVWKVTD PPQFSGGHWK  420
NMLTGLCTMQ DTVDDSEGMA SSSESEDDEE NNSLVSIMAH RKSTQGSSMN RIAASAKLYD  480
ILEYICDLHE LPLAVTRISY YQDGNTNSKG KRILCIDDSA CYVNDCNMDG FVDEYARLRL  540
EEGQGIAGKA LQSNIHIQHD ISVLDPAEFP WDDYGIIWDI RICHAAFAIR LTSNHPCKDD  600
YVLEFVLPRF MKETSEVELL INKVLLTLQR KCLKLWKLGV RDINEARLNA TSIEAEETRE  660
LLEQGQPGTA HLNWTLYKNT GHKNQK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213918	0.0	AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011014362.1	0.0	PREDICTED: uncharacterized protein LOC105118171
TrEMBL	A0A3N7G5D1	0.0	A0A3N7G5D1_POPTR; Uncharacterized protein
TrEMBL	A0A3N7H1S7	0.0	A0A3N7H1S7_POPTR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20622	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-36	GRAS family protein