PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG013481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 182aa MW: 21053.1 Da PI: 9.564 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.9 | 1.2e-15 | 26 | 111 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 sd +k++ + + ++f+++hg++ sk +++ +s +W+v l k+++++ ++kGW+ F ++ gDf+vF+++g+s f +v +++ CCG013481.1 26 LSDIMKNQKIAILRRFFRKHGES--LSKSAVIKAPSAATWKVAL--LKHKDEVSFAKGWEMFIAYYSIDYGDFLVFEYEGNSLF--TVFIID 111 48999***************966..8999***************..*********************************99888..665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-19 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-21 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.182 | 20 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.50E-12 | 20 | 111 | No hit | No description |
SMART | SM01019 | 3.4E-7 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-12 | 26 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MASCSKRGNN GSLFTPKKTH FIRIILSDIM KNQKIAILRR FFRKHGESLS KSAVIKAPSA 60 ATWKVALLKH KDEVSFAKGW EMFIAYYSID YGDFLVFEYE GNSLFTVFII DKSFTEVGYQ 120 WNNTEAAESN QEDKLGDHED DDDDASVEFI DIRIMKMMPL LNSLTFRLAH KKQERRPKGR 180 KN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039264.1 | 1e-106 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A3N7FCF0 | 1e-83 | A0A3N7FCF0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11870.1 | 3e-84 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-17 | B3 family protein |