PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013461.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 325aa MW: 34483.3 Da PI: 8.8379

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013461.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.3e-39	62	121	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++s CCG013461.1 62 QENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNTS 121 7889*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	62	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	63	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MIQELLGGAG LIGGERKIPI NATILEGTPS PSPSLSPSPS PSSSTTSATT TSATNSTPSS 60 AQENLRCPRC DSSNTKFCYY NNYNLTQPRH FCKTCRRYWT KGGALRNVPI GGGCRKNKNT 120 SVSASVGKSG TNKMKTMASD IGRSGFGNGF EHELSSSPIM WASPQNSHIL ALLRATQNPN 180 PNPSTLSNSI FVKEEGGLIG NQFISEPGVG TAALNARTVG MDPISQVPSL GLCSPFWKNN 240 QHQQNGFTVV EAQNSGIQEL YQRLRSSTNY YTDNPSAIVL SNVATSSSTS TSTILESAPV 300 AGGELGYWNP AFSWSDLPTT NGAYP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144749	0.0	EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011039230.1	0.0	PREDICTED: dof zinc finger protein DOF1.1-like isoform X1
TrEMBL	A9P9B5	0.0	A9P9B5_POPTR; Uncharacterized protein
STRING	POPTR_0007s11620.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-34	TARGET OF MONOPTEROS 6