PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013195.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 355aa    MW: 40230.1 Da    PI: 5.1174
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013195.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.7e-34461372102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+++++++sw++ g+sfv +d++++++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F  g+k+ll++ik
   CCG013195.1  46 FLTKTFDMVDDPTTNHIVSWNRGGSSFVAWDPHSLSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLSGQKHLLRNIK 133
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   CCG013195.1 134 RRKA 137
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.93E-3442135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-3742135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-5842135IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-204669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNPFFTVKQE YAGSSSSPPS GGDEPPPIML PPQPREGLHD TGPPPFLTKT FDMVDDPTTN  60
HIVSWNRGGS SFVAWDPHSL STNLLPRYFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEG  120
FLSGQKHLLR NIKRRKAPSQ PLTQQQAPDA CVEVGRFGLD GEIDRLKRDK QVLMMELVKL  180
RQQQQNARSY IQAMEQRLQA IEQKQQQMMQ FLARAMQNPA FLQQLVQQKE KKKELEEAMT  240
KKRRRPIDQG SSRGGGGESS HIGGSANPIK AEPLESGDLE IEVSELEALA LEMQGYGRAR  300
REQEDGVEEL ETPESKDREL DEGFWEELLN ESTGGDEDDV NILAERMGYL GSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-234413518120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230244KKKELEEAMTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139870.0KP013987.1 Populus simonii heat shock transcription factor A7a1 (HsfA7a1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032638.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
SwissprotQ9LUH81e-127HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9H8D40.0B9H8D4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s23640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-108heat shock transcription factor A6B