PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG013195.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 355aa MW: 40230.1 Da PI: 5.1174 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.4 | 2.7e-34 | 46 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+++++++sw++ g+sfv +d++++++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F g+k+ll++ik CCG013195.1 46 FLTKTFDMVDDPTTNHIVSWNRGGSSFVAWDPHSLSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLSGQKHLLRNIK 133 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k CCG013195.1 134 RRKA 137 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 9.93E-34 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.2E-37 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.4E-58 | 42 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.1E-30 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.8E-20 | 46 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.8E-20 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 85 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.8E-20 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MNPFFTVKQE YAGSSSSPPS GGDEPPPIML PPQPREGLHD TGPPPFLTKT FDMVDDPTTN 60 HIVSWNRGGS SFVAWDPHSL STNLLPRYFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEG 120 FLSGQKHLLR NIKRRKAPSQ PLTQQQAPDA CVEVGRFGLD GEIDRLKRDK QVLMMELVKL 180 RQQQQNARSY IQAMEQRLQA IEQKQQQMMQ FLARAMQNPA FLQQLVQQKE KKKELEEAMT 240 KKRRRPIDQG SSRGGGGESS HIGGSANPIK AEPLESGDLE IEVSELEALA LEMQGYGRAR 300 REQEDGVEEL ETPESKDREL DEGFWEELLN ESTGGDEDDV NILAERMGYL GSSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-23 | 44 | 135 | 18 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 244 | KKKELEEAMTKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP013987 | 0.0 | KP013987.1 Populus simonii heat shock transcription factor A7a1 (HsfA7a1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032638.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like isoform X1 | ||||
Swissprot | Q9LUH8 | 1e-127 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | B9H8D4 | 0.0 | B9H8D4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s23640.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-108 | heat shock transcription factor A6B |