PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013194.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 492aa MW: 53988.6 Da PI: 9.1904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013194.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CCG013194.1 73 FVCEICNKGFQRDQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	12.2	0.00055	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ CCG013194.1 149 WKCEKCSKIYAVQSDWKAHSKTC 171 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.64E-6	72	95	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	72	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	73	95	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.8E-5	73	95	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	114	144	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.3E-4	137	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.64E-6	144	169	No hit	No description
SMART	SM00355	170	149	169	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MSNSTSLSEE ASVSSGTRLQ EFGSLNPLAS NFSPLQQQQQ KIIKKKRSLP GNPDPDAEVI 60 ALSPKTLLAT HRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNSKEIK KKAYVCPEPT 120 CVHHHPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRKDSF VTHRAFCDAL AEESARLSAH QLISTDPNAQ ALLLQNPLQA HPISLFSAPN 240 PTHQQQILLQ NPLQAHPISL FSAPNPTHQQ QISLASPWDP PRHHNPSSNN HQNPVHIKPE 300 THNHFQIPPL LQEPPPPALP SHKGLLASTF QSLSNAVTSS AASHHLSATA LLQKAASVGA 360 AQTSVGHSQM TQLDMGELGS AGQVHVNSAS HVAQGPNYNL NSLATWQKSD GLTRDFLGLT 420 GECEDHHVHA GSNSNGRSGG VNASMNVREI LTYTGVVGFH QQQYNERDHS LLKPPGGFGF 480 AQPSASKTWG DC

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MSNSTSLSEE ASVSSGTRLQ EFGSLNPLAS NFSPLQQQQQ KIIKKKRSLP GNPDPDAEVI  60
ALSPKTLLAT HRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNSKEIK KKAYVCPEPT  120
CVHHHPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRKDSF VTHRAFCDAL AEESARLSAH QLISTDPNAQ ALLLQNPLQA HPISLFSAPN  240
PTHQQQILLQ NPLQAHPISL FSAPNPTHQQ QISLASPWDP PRHHNPSSNN HQNPVHIKPE  300
THNHFQIPPL LQEPPPPALP SHKGLLASTF QSLSNAVTSS AASHHLSATA LLQKAASVGA  360
AQTSVGHSQM TQLDMGELGS AGQVHVNSAS HVAQGPNYNL NSLATWQKSD GLTRDFLGLT  420
GECEDHHVHA GSNSNGRSGG VNASMNVREI LTYTGVVGFH QQQYNERDHS LLKPPGGFGF  480
AQPSASKTWG DC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-36	145	209	3	67	Zinc finger protein JACKDAW
5b3h_F	6e-36	145	209	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM461724	1e-138	AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011032635.1	0.0	PREDICTED: zinc finger protein MAGPIE-like isoform X1
Swissprot	Q9ZWA6	1e-113	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	B9H8D5	0.0	B9H8D5_POPTR; Uncharacterized protein
STRING	POPTR_0005s23660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-108	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]