PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013102.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 318aa    MW: 36157.7 Da    PI: 6.2436
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013102.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.95.6e-2581283128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk.kg 97 
                  +G rF+Pt +el++++L +k+ g+++ + + i+ +d+y+ +PwdLp   ++++ e yfFs+ + ky+  ++ r nr+t++g W a+gkd e++s+ +g
  CCG013102.1   8 VGDRFSPTKDELITHFLMQKLLGNDHLV-SRIPLLDVYQRDPWDLP---YSDDGEGYFFSPLHPKYPgtNNGRINRSTRTGSWLAKGKDYEITSQhNG 101
                  689**********************877.77***************...4578899**********976788*********************99889 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  e++g+++++v     +++    + vmhe+++
  CCG013102.1 102 EVIGIRRIFVHS--CNKD--GIKYVMHEFSI 128
                  99*******997..3334..4689****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-306142IPR003441NAC domain
PROSITE profilePS5100528.8516157IPR003441NAC domain
PfamPF023656.7E-148128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTPSEYNVGD RFSPTKDELI THFLMQKLLG NDHLVSRIPL LDVYQRDPWD LPYSDDGEGY  60
FFSPLHPKYP GTNNGRINRS TRTGSWLAKG KDYEITSQHN GEVIGIRRIF VHSCNKDGIK  120
YVMHEFSIPN QNSLVLCKLM KKMPSKKSEG TCKKVKKRKE AAELPLPICN EDNSTLSSGL  180
MKKKMPDKKS AGPCKKVKTT QDKADMPYNK ENIIPVPDEG SDFENWITSD KSDYNNIIDN  240
KDQQTAKSTC ENGGTNCLKT SSASVYHVAD FTTPEDYQGD PEILPHLQSF SGYDQQDLTL  300
HDFTLDDDLY IWLEPLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-17914723173NAC domain-containing protein 19
3swm_B1e-17914723173NAC domain-containing protein 19
3swm_C1e-17914723173NAC domain-containing protein 19
3swm_D1e-17914723173NAC domain-containing protein 19
3swp_A1e-17914723173NAC domain-containing protein 19
3swp_B1e-17914723173NAC domain-containing protein 19
3swp_C1e-17914723173NAC domain-containing protein 19
3swp_D1e-17914723173NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158KKVKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2859698e-84GU285969.1 Populus balsamifera isolate GAL12 haplotype B unknown protein gene, partial sequence.
GenBankGU2859728e-84GU285972.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence.
GenBankGU2859748e-84GU285974.1 Populus balsamifera isolate STO11 haplotype A unknown protein gene, partial sequence.
GenBankGU2859768e-84GU285976.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002895.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A2K1WS640.0A0A2K1WS64_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2314134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.15e-24NAC domain containing protein 57