PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG013055.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 24186.4 Da PI: 5.1867 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++e++ l CCG013055.2 7 SCGACKFLRRKCTSECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASLQEEIEIL 104 6************************978********************************************************************99 PP DUF260 98 kee 100 +++ CCG013055.2 105 ENQ 107 887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.347 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-37 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN 60 RGDAAITISY EALARMRDPI YGCVAHIFAL QQQVASLQEE IEILENQMAS LPVGVAGFGS 120 SPTISNTNCE MLFSFQQDAM NTQYYQNPQS AQLNHSGYTT GNQTFDGQMS MPLPPLYGWE 180 DHDIFCNSHP RPLERLLEEV DKEIFAYCSW PDSGNIII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002633.1 | 1e-165 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9LHS8 | 5e-57 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | B9HT79 | 1e-158 | B9HT79_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s20800.1 | 1e-159 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 9e-48 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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