PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013035.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 917aa MW: 99845.2 Da PI: 6.7106

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013035.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.3	1.4e-18	327	427	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++lv+ CCG013035.1 327 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTVTFSRMD-PEGKLVM 422 99************************555567778***********99899999999.*******************876.7777888 PP EEE-S CS B3 95 kvfrk 99 +++++ CCG013035.1 423 GFRKA 427 77765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-30	321	435	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-20	324	427	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.71E-23	325	426	No hit	No description
SMART	SM01019	2.4E-21	327	428	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.18	327	428	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-16	327	427	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.687	592	642	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.9E-10	597	639	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MASSSIKSCM NATCGVSTSS SAGWRKGWVL RSGDFAILCD NCGSEYEQSV FCEVFHSKDS 60 GWRECTSCGK RLHCGCIASK SLLELLDGGG VNCTSCSKSA GVSSVNGDEK TNGCGISKVD 120 DAGELQSASA DNQLTTETKL MQLGNCIDRI ATRNLLQLQS SETDGSYRKM KQEDILPPVG 180 EFASTSFSNF NQVSNASSQT AKPEIHRTTA AKDLYESLAQ TNLSISLGSS LGNPNPFPGG 240 VVDERVLAKA SSPLQQGPRS RHLLPKPPKP ALVMDANAGM VSQIRVARPP AEGRGRNQLL 300 PRYWPRITDQ ELQQISGDPN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE 360 GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MKLQAGDTVT FSRMDPEGKL 420 VMGFRKASNS IAMQDTQPSA IPNGVPSSES YFSGVFENLP IISGYSGLLH SLKGSTDTHL 480 SVLSKHLHSA SGDSSWHKSE KQEARTRDGL LLPSLLAPER KRLRNIGSKS KRLLIDSLDA 540 LELKVTWEEA QDLLRPEPSI KPSIVTIEDH DFEEYEEPPV FGKTSIFVVR SIGGQEQWAQ 600 CDSCSKWRRL PIDVLLPPKW TCVDNAWDQS RCSCSAPDEL APRELENLLR LNKDFKKRRI 660 TGSHRPAQEH ESSGLDALAN AAILGDAGEQ STTAVAATTK HPRHRPGCSC IVCIQPPSGK 720 GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR IQHMSGPKDE ADVESSSKLA 780 STPMDPSDNE ARSGNELESK SQTNNLSNKL ADSGKGHLDL NCHPGREEDS QAGLARMSMT 840 SLLQVASLPL ETYLKQNGLA SLSEQQASSA SHVPPQAGEN GARIDEDCQP ASVPQEQDSG 900 GEEDDEPGPD QSQTDLL

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MASSSIKSCM NATCGVSTSS SAGWRKGWVL RSGDFAILCD NCGSEYEQSV FCEVFHSKDS  60
GWRECTSCGK RLHCGCIASK SLLELLDGGG VNCTSCSKSA GVSSVNGDEK TNGCGISKVD  120
DAGELQSASA DNQLTTETKL MQLGNCIDRI ATRNLLQLQS SETDGSYRKM KQEDILPPVG  180
EFASTSFSNF NQVSNASSQT AKPEIHRTTA AKDLYESLAQ TNLSISLGSS LGNPNPFPGG  240
VVDERVLAKA SSPLQQGPRS RHLLPKPPKP ALVMDANAGM VSQIRVARPP AEGRGRNQLL  300
PRYWPRITDQ ELQQISGDPN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE  360
GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MKLQAGDTVT FSRMDPEGKL  420
VMGFRKASNS IAMQDTQPSA IPNGVPSSES YFSGVFENLP IISGYSGLLH SLKGSTDTHL  480
SVLSKHLHSA SGDSSWHKSE KQEARTRDGL LLPSLLAPER KRLRNIGSKS KRLLIDSLDA  540
LELKVTWEEA QDLLRPEPSI KPSIVTIEDH DFEEYEEPPV FGKTSIFVVR SIGGQEQWAQ  600
CDSCSKWRRL PIDVLLPPKW TCVDNAWDQS RCSCSAPDEL APRELENLLR LNKDFKKRRI  660
TGSHRPAQEH ESSGLDALAN AAILGDAGEQ STTAVAATTK HPRHRPGCSC IVCIQPPSGK  720
GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR IQHMSGPKDE ADVESSSKLA  780
STPMDPSDNE ARSGNELESK SQTNNLSNKL ADSGKGHLDL NCHPGREEDS QAGLARMSMT  840
SLLQVASLPL ETYLKQNGLA SLSEQQASSA SHVPPQAGEN GARIDEDCQP ASVPQEQDSG  900
GEEDDEPGPD QSQTDLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-69	305	434	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	735	746	KRRFKTLMMRKK
2	735	748	KRRFKTLMMRKKKR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU129195	1e-151	GU129195.1 Populus balsamifera MORC family ATPase (VP) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002600.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like
Refseq	XP_011002602.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2K1XFA3	0.0	A0A2K1XFA3_POPTR; Uncharacterized protein
STRING	POPTR_0016s14350.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11018	32	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]