PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013012.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 444aa    MW: 47836.6 Da    PI: 6.1215
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013012.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP31.36.8e-1031921979
          TCP 19 dRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79
                   R+R++a c   ++ + deLG+ +  ++i WL +   p  +  ++t+++++s+   +  + 
  CCG013012.1 31 KVRIRMPAICSPAIYRIKDELGLSSCDEAIHWLVRHVRPDLIPVPETPTKKKSSKnGPIPKT 92
                 56*********************************************777764444333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-53383IPR005333Transcription factor, TCP
SuperFamilySSF563177.72E-63130409IPR003010Carbon-nitrogen hydrolase
Gene3DG3DSA:3.60.110.103.4E-66131408IPR003010Carbon-nitrogen hydrolase
PROSITE profilePS5026338.347132421IPR003010Carbon-nitrogen hydrolase
CDDcd075641.09E-105132405No hitNo description
PfamPF007951.2E-55133403IPR003010Carbon-nitrogen hydrolase
PROSITE patternPS009200164179IPR000132Nitrilase/cyanide hydratase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEEEFAKNAE AKQVKKRGPR PLIVAQSQAK KVRIRMPAIC SPAIYRIKDE LGLSSCDEAI  60
HWLVRHVRPD LIPVPETPTK KKSSKNGPIP KTGSVDHDSV PKPACRASPD ADIPAYDFLP  120
TTGGVPAARS PVKATVVQAS TVFFDTPATL EKAERLIAGA AAYGSQLLVF PEAFVGGYPT  180
CVKLDATNSP ETDGDLQKYY ASAIDVPGPE VDRLAKFAGK YKVHLVMGVV ERAGCYLYST  240
MLFFDSLGKC LGQHRKLIQT ASESALWRSG EKSTLPTYET SIGKIGGLIC WDNRLPLLRT  300
ELYDKGVEIY CAPTADAGEL WRASMTHIAL EGSCFVLSAN QFCRRRDYYP LPPGDINGDA  360
SLDDITCAGG SVIISPSGTI LASPDYQGEC LISADLDLGH IILAKTQYGG IESDVDKNHV  420
SVAANGSEPS LSAAEMNTKA LEEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wuy_A7e-3613240116285Nitrilase
3wuy_B7e-3613240116285Nitrilase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHighly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2852808e-94GU285280.1 Populus balsamifera isolate KUU07 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852818e-94GU285281.1 Populus balsamifera isolate KUU07 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852828e-94GU285282.1 Populus balsamifera isolate MGR10 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852838e-94GU285283.1 Populus balsamifera isolate MGR10 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852848e-94GU285284.1 Populus balsamifera isolate NWL07 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852858e-94GU285285.1 Populus balsamifera isolate NWL07 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852868e-94GU285286.1 Populus balsamifera isolate POR11 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852878e-94GU285287.1 Populus balsamifera isolate POR11 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852888e-94GU285288.1 Populus balsamifera isolate RNA13 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852898e-94GU285289.1 Populus balsamifera isolate RNA13 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852908e-94GU285290.1 Populus balsamifera isolate STL13 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852918e-94GU285291.1 Populus balsamifera isolate STL13 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852928e-94GU285292.1 Populus balsamifera isolate STO11 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852938e-94GU285293.1 Populus balsamifera isolate STO11 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852948e-94GU285294.1 Populus balsamifera isolate WHR03 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852958e-94GU285295.1 Populus balsamifera isolate WHR03 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852968e-94GU285296.1 Populus balsamifera isolate LOV02 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852978e-94GU285297.1 Populus balsamifera isolate LOV02 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852988e-94GU285298.1 Populus balsamifera isolate GIL14 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852998e-94GU285299.1 Populus balsamifera isolate GIL14 haplotype B nitrilase 4 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043651.10.0PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like
SwissprotQ429661e-125NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBLA0A2K1XC700.0A0A2K1XC70_POPTR; Uncharacterized protein
STRINGPOPTR_0016s07510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1789636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-06TCP family protein
Publications ? help Back to Top
  1. Dohmoto M,Sano J,Tsunoda H,Yamaguchi K
    Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco.
    DNA Res., 1999. 6(5): p. 313-7
    [PMID:10574458]
  2. Piotrowski M,Schönfelder S,Weiler EW
    The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase.
    J. Biol. Chem., 2001. 276(4): p. 2616-21
    [PMID:11060302]