PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG013000.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1773aa MW: 198169 Da PI: 5.4333

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG013000.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	9.3e-19	30	86	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t++qle+Le+ ++ + yps++ r+eL+ +lgL++rq ++WF+ rR k++k CCG013000.1 30 KSKRKMKTASQLEILEKTYAADTYPSEAVRAELSVQLGLSDRQLQMWFCHRRLKDRK 86 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-17	17	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-16	23	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.763	27	87	IPR001356	Homeobox domain
SMART	SM00389	1.5E-16	29	91	IPR001356	Homeobox domain
Pfam	PF00046	2.5E-16	30	86	IPR001356	Homeobox domain
CDD	cd00086	2.10E-14	30	86	No hit	No description
PROSITE profile	PS50827	16.381	562	621	IPR018501	DDT domain
SMART	SM00571	1.8E-21	562	621	IPR018501	DDT domain
Pfam	PF02791	1.7E-16	563	618	IPR018501	DDT domain
Pfam	PF05066	6.0E-14	741	808	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.0E-9	957	999	IPR028942	WHIM1 domain
Pfam	PF15613	1.7E-13	1145	1217	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1773 aa Download sequence Send to blast
MEEASSGGGG GSGGVEVDGK KKTPGEGESK SKRKMKTASQ LEILEKTYAA DTYPSEAVRA 60 ELSVQLGLSD RQLQMWFCHR RLKDRKAPLV KRPHKESPSP AGMPGGVEMG VGTEVGNEHG 120 SGSASLSGLG VDSRRAVGRP TGVAVPRISA DVQALKRYYE PQQSVAELRV IAFVEAQLGE 180 PLREDGPILG MEFDPLPPDA FGAPIGSATL GQQKQPVRIF ESNLYERSDV KSIKGATRTL 240 HEYQFLPQQP TVKAEAYERA APSFQYGSPA DGHNTKTGSL SATRSFMHAN EQVSSGYGFS 300 SQMPSLSLMP QEGRQGHLLP SATGEYENTS QKIPFTNVGM DVQIGAHPIT ALDNPFMSSD 360 QRVTRDENAL RMERKRKSEE ARITREVEAH EKRIRKELEK QDILNRKREE QIRKEMERHD 420 RERRKEEERL LREKQREVER YQREQRRELE RREKFLQKES IRVEKMRQKE ELRREREAAR 480 QKAASERAIA RRMAKESLEL VEDERLELME LAASSKGLPS IIPLDFETLQ NLDLFRDKLT 540 EFPPKSVLLK RPFLIQPWNG SEENIGNLLM VWRFLITFVD VLGIWPFTLD EFVQAFHDYE 600 PRLLGEIHIS LLKSIIKDIE DVARTPATSL GPNQNSAANP GGGHPHIAYA WGFDIRSWQR 660 HLNPLTWPEI LRQFGLSAGF GPQLKKRNVE QAYLRDDNEG NDGEDVITNL RNGAAVENAF 720 AIMQERGFSN PRRSRHRLTP GTVKFASFHV LSLEGSKGLT ILEVADKIQK SGLRDLTTSK 780 TPEASIAAAL SRDSKLFERT APSTYCVRPP YRKDPADAEA ILSAARERIR VFKSGIVDGE 840 DADDAERDED SVSDVAEDPD IDDLGTELNS KKEAHDSPEV NEFNGKTLLM NGKESGNVLK 900 TPQVSLVNVG VGLTSLHSEG TNEVRGAASS IDRSVDVAEI CTTPVQGDVD IDESNPGEPW 960 VQGLADGEYS DLSVEERLSA LVALIGVAIE GNSIRVILEM RIVQERLEAA NALKKQMWAE 1020 AQLDKRRMKE EFVMRTQYSS FTGNKMELNL TISASEGRQS PMVNVDDRSN GMSVNASFQQ 1080 DRSSDQQSDM NYLTNMSSEG NMQMQDLSAD TDNLPYQQAG HASEKSRSQL KSVIGHRAEE 1140 MYVYRSLPLG QDRRRNRYWQ FTTSASRNDP GCGRIFVELH DGRWRVIDSE EGFNALLSSL 1200 DIRGVRESHL HAMLHKIEVP FKETLRKRML HASTEGKSKG PIKAEAVETA AGIECGSGMD 1260 SPQSTVCIPD SDMSETSTSF TIELGRNEIE KNHALKRFQD FEKWMWNECF KSSGLCAMKY 1320 GKKRCTQRLG VCDYCCDTYL SEDNHCPSCH KTYDASQVGL NFSEHVVHCE RKLKVDPDSA 1380 LCSSSFPLRI RLLKLLLALI EAILPEALQP VWTNDYRKSW GMKLQSSSSV EDLLQILTLL 1440 EGGMKRDYLS SNYETSSELL RSSDPSACAA YGSFNTETVP VLPWLPQTTA AVALRIIEFD 1500 ASISYMLHQK LEAHKDRSTR SFIKLPSKCA AMKNTPDHEI TESSRKAGLF QEDNWVDVGI 1560 GLAGPGREQG IRGRGRGRTR GGRSQTRIIG SRSVSSKRSV AKSSDRLGKA LSWKGRPRGR 1620 GGCKRGRRSV RSRQKTVKQA ADFIPERKIP QETICEQSTN CLGRDDWNGD ETRFLEDAEN 1680 VSSSERSEFD VENENILASG DEYDDMGVDD YAGGFNGKSD DLLEGSDYIM DGNEDDDDAV 1740 NEDEDELGDL DVEEYINGDP DDGTESSSSD FID

Sequence ? help Back to Top

Protein Sequence Length: 1773 aa Download sequence Send to blast

MEEASSGGGG GSGGVEVDGK KKTPGEGESK SKRKMKTASQ LEILEKTYAA DTYPSEAVRA  60
ELSVQLGLSD RQLQMWFCHR RLKDRKAPLV KRPHKESPSP AGMPGGVEMG VGTEVGNEHG  120
SGSASLSGLG VDSRRAVGRP TGVAVPRISA DVQALKRYYE PQQSVAELRV IAFVEAQLGE  180
PLREDGPILG MEFDPLPPDA FGAPIGSATL GQQKQPVRIF ESNLYERSDV KSIKGATRTL  240
HEYQFLPQQP TVKAEAYERA APSFQYGSPA DGHNTKTGSL SATRSFMHAN EQVSSGYGFS  300
SQMPSLSLMP QEGRQGHLLP SATGEYENTS QKIPFTNVGM DVQIGAHPIT ALDNPFMSSD  360
QRVTRDENAL RMERKRKSEE ARITREVEAH EKRIRKELEK QDILNRKREE QIRKEMERHD  420
RERRKEEERL LREKQREVER YQREQRRELE RREKFLQKES IRVEKMRQKE ELRREREAAR  480
QKAASERAIA RRMAKESLEL VEDERLELME LAASSKGLPS IIPLDFETLQ NLDLFRDKLT  540
EFPPKSVLLK RPFLIQPWNG SEENIGNLLM VWRFLITFVD VLGIWPFTLD EFVQAFHDYE  600
PRLLGEIHIS LLKSIIKDIE DVARTPATSL GPNQNSAANP GGGHPHIAYA WGFDIRSWQR  660
HLNPLTWPEI LRQFGLSAGF GPQLKKRNVE QAYLRDDNEG NDGEDVITNL RNGAAVENAF  720
AIMQERGFSN PRRSRHRLTP GTVKFASFHV LSLEGSKGLT ILEVADKIQK SGLRDLTTSK  780
TPEASIAAAL SRDSKLFERT APSTYCVRPP YRKDPADAEA ILSAARERIR VFKSGIVDGE  840
DADDAERDED SVSDVAEDPD IDDLGTELNS KKEAHDSPEV NEFNGKTLLM NGKESGNVLK  900
TPQVSLVNVG VGLTSLHSEG TNEVRGAASS IDRSVDVAEI CTTPVQGDVD IDESNPGEPW  960
VQGLADGEYS DLSVEERLSA LVALIGVAIE GNSIRVILEM RIVQERLEAA NALKKQMWAE  1020
AQLDKRRMKE EFVMRTQYSS FTGNKMELNL TISASEGRQS PMVNVDDRSN GMSVNASFQQ  1080
DRSSDQQSDM NYLTNMSSEG NMQMQDLSAD TDNLPYQQAG HASEKSRSQL KSVIGHRAEE  1140
MYVYRSLPLG QDRRRNRYWQ FTTSASRNDP GCGRIFVELH DGRWRVIDSE EGFNALLSSL  1200
DIRGVRESHL HAMLHKIEVP FKETLRKRML HASTEGKSKG PIKAEAVETA AGIECGSGMD  1260
SPQSTVCIPD SDMSETSTSF TIELGRNEIE KNHALKRFQD FEKWMWNECF KSSGLCAMKY  1320
GKKRCTQRLG VCDYCCDTYL SEDNHCPSCH KTYDASQVGL NFSEHVVHCE RKLKVDPDSA  1380
LCSSSFPLRI RLLKLLLALI EAILPEALQP VWTNDYRKSW GMKLQSSSSV EDLLQILTLL  1440
EGGMKRDYLS SNYETSSELL RSSDPSACAA YGSFNTETVP VLPWLPQTTA AVALRIIEFD  1500
ASISYMLHQK LEAHKDRSTR SFIKLPSKCA AMKNTPDHEI TESSRKAGLF QEDNWVDVGI  1560
GLAGPGREQG IRGRGRGRTR GGRSQTRIIG SRSVSSKRSV AKSSDRLGKA LSWKGRPRGR  1620
GGCKRGRRSV RSRQKTVKQA ADFIPERKIP QETICEQSTN CLGRDDWNGD ETRFLEDAEN  1680
VSSSERSEFD VENENILASG DEYDDMGVDD YAGGFNGKSD DLLEGSDYIM DGNEDDDDAV  1740
NEDEDELGDL DVEEYINGDP DDGTESSSSD FID

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231346	0.0	CU231346.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043631.1	0.0	PREDICTED: uncharacterized protein LOC105139032 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2K1X1X3	0.0	A0A2K1X1X3_POPTR; Uncharacterized protein
STRING	POPTR_0017s04760.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator