PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG012995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 179aa MW: 20199.8 Da PI: 7.6286 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 21 | 74 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ ++ql+ Le+ F+ n++++ae+++eLA++lg++ +qV +W+qNrRa++k+ CCG012995.1 21 KKRLARDQLNLLETSFNANQKLKAEHKTELARQLGVPPKQVAIWYQNRRARHKN 74 456899**********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 96 | 3.9e-31 | 20 | 111 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++q++lLE+sF++++kL+ e+K+elar+Lg+ p+qva+W+qnrRAR+k+ +E+dy ++ ++ ++ +en rLek+v+ L+ el++ CCG012995.1 20 RKKRLARDQLNLLETSFNANQKLKAEHKTELARQLGVPPKQVAIWYQNRRARHKNDAIEHDYMNIQLELGNVLAENIRLEKQVSMLKFELNK 111 89************************************************************************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.96E-16 | 6 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.904 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-15 | 18 | 79 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.9E-16 | 20 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.47E-14 | 20 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 23 | 81 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MDSSLHHQSQ SQGNRPLKPR KKRLARDQLN LLETSFNANQ KLKAEHKTEL ARQLGVPPKQ 60 VAIWYQNRRA RHKNDAIEHD YMNIQLELGN VLAENIRLEK QVSMLKFELN KVQQMILFGS 120 TSSAATLPSV SGSSDEQANS SSPGNMICNW GDAGNDDIFP VEELYTCLIG SETQLWPLN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006372763.1 | 1e-128 | homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | U5FHZ5 | 1e-126 | U5FHZ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s04820.1 | 1e-122 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16535 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 4e-21 | homeobox protein 52 |