PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012980.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 987aa MW: 108317 Da PI: 5.5783

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012980.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ CCG012980.1 598 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	581	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	601	649	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.1E-24	885	964	No hit	No description
PROSITE profile	PS51745	20.772	885	967	IPR000270	PB1 domain
SuperFamily	SSF54277	2.16E-21	885	970	No hit	No description
SMART	SM00666	8.0E-22	885	967	IPR000270	PB1 domain
CDD	cd06407	8.27E-31	886	966	No hit	No description
Pfam	PF00564	1.5E-17	886	966	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MENPFSSKEK GTGYWASPRA QMDGATPLDG SPRNLLLEDP FNNFSELMNF DIYAELCNNP 60 SAMDQMLDPF GMPSFPSPSY PSFDPGSFAA LNSAPVQNTT NAAGTSYNGG DKVVLQQINS 120 HFCYPSDSID TDDLGPKHSN DAGQQNRFSN LTDHIIARPL APSLDERMLR ALSSLKVSSG 180 GGFLAQVWVP RRIGNQYMLS TTDQPYLLDE MLAGFREVSR TFTFPAEVKP GLPLGLPGRV 240 FISKVPEWTS NVIYYSKGEY LRAKHAADHE VRGSFALPVF DPDEKSCCAV LELVTMKEKL 300 DFDSEMENVC HALEAVNLRS TASPRLLPQC LSSNKKAALS EIADVLRAVC HAHRLPLALT 360 WIPCNYTEEA LDEIIKVRVR EANSRSSGKC VLCIEDTACY VNDREMQGFA HACAEHYIEE 420 GQGIAGKALQ SNHPFFFSDV KAYDITEYPL VHHARKYGLN AAVAIRLRST YTGDEDYILE 480 FFLPVNIKGS SDQQLLLNNL SGTMQRICKS LRTVSDTEFV RQECSEDGLP KEAVPSVRPM 540 SISKGSSQTA LSEGNLNSAA KMLFNMSGSK NCQTESNSSN EQKMSGSRRQ VEKKRSTAEK 600 TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL 660 DTVQGVEGGL KFDPTAGGFI AGGAMMQEFD LRNGFVFQEK NLSNRNSDPA NHDVVSVRPA 720 PCTDGNNSTV KVENDECHIG SRGALKESCV HVIDCSEDAK SAATDAGLCE QANFGSGPWA 780 CLESDITGSL ARAGNKWGME NGGIILENLD THFVSQSSSS FAKEMDTKME GDDGNVEHNQ 840 PTCSSMTDSS SGTGSMMHGS ISSSSSFEER KHSKLKTSFC DGDLKITVKA SYKEDIIRFK 900 FDPSAGCLQL YKEVSNRFKL QTGTFQLKYL DDEEEWVLLV SDSDLQECLE IMEYVGTRNV 960 KFLVRDAVAP FIMGSSGSSN SFLVGSS

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MENPFSSKEK GTGYWASPRA QMDGATPLDG SPRNLLLEDP FNNFSELMNF DIYAELCNNP  60
SAMDQMLDPF GMPSFPSPSY PSFDPGSFAA LNSAPVQNTT NAAGTSYNGG DKVVLQQINS  120
HFCYPSDSID TDDLGPKHSN DAGQQNRFSN LTDHIIARPL APSLDERMLR ALSSLKVSSG  180
GGFLAQVWVP RRIGNQYMLS TTDQPYLLDE MLAGFREVSR TFTFPAEVKP GLPLGLPGRV  240
FISKVPEWTS NVIYYSKGEY LRAKHAADHE VRGSFALPVF DPDEKSCCAV LELVTMKEKL  300
DFDSEMENVC HALEAVNLRS TASPRLLPQC LSSNKKAALS EIADVLRAVC HAHRLPLALT  360
WIPCNYTEEA LDEIIKVRVR EANSRSSGKC VLCIEDTACY VNDREMQGFA HACAEHYIEE  420
GQGIAGKALQ SNHPFFFSDV KAYDITEYPL VHHARKYGLN AAVAIRLRST YTGDEDYILE  480
FFLPVNIKGS SDQQLLLNNL SGTMQRICKS LRTVSDTEFV RQECSEDGLP KEAVPSVRPM  540
SISKGSSQTA LSEGNLNSAA KMLFNMSGSK NCQTESNSSN EQKMSGSRRQ VEKKRSTAEK  600
TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL  660
DTVQGVEGGL KFDPTAGGFI AGGAMMQEFD LRNGFVFQEK NLSNRNSDPA NHDVVSVRPA  720
PCTDGNNSTV KVENDECHIG SRGALKESCV HVIDCSEDAK SAATDAGLCE QANFGSGPWA  780
CLESDITGSL ARAGNKWGME NGGIILENLD THFVSQSSSS FAKEMDTKME GDDGNVEHNQ  840
PTCSSMTDSS SGTGSMMHGS ISSSSSFEER KHSKLKTSFC DGDLKITVKA SYKEDIIRFK  900
FDPSAGCLQL YKEVSNRFKL QTGTFQLKYL DDEEEWVLLV SDSDLQECLE IMEYVGTRNV  960
KFLVRDAVAP FIMGSSGSSN SFLVGSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231638	1e-108	CU231638.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043578.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_011043579.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_011043580.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_011043581.1	0.0	PREDICTED: protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2K1R7I5	0.0	A0A2K1R7I5_POPTR; Uncharacterized protein
STRING	POPTR_0017s04980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]