PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012979.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 513aa MW: 58024.6 Da PI: 4.5301

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012979.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	88.1	1.5e-27	8	216	4	222
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 Ll+cA+a++ gdl+la++l++ + + d+ +l++yf+eAL +r+++ ly +p++ ++ ++ + ++ ++ +P++ fs lt+ + CCG012979.1 8 KLLDCAKAIEVGDLHLADSLIKDILT------DNDDKLVKYFAEALVRRVYK----LY-PRNPRPLVPSCTDLRC---NMDYQFFPFFWFSELTTRNS 91 79*****************99864......67789***********....44.2333333332233333...345899********** PP GRAS 102 IleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 I++a+ g++r +iDf+++ +G W Ll+ ++++++ s+ +T +g+ s++ + l+e+ e+L k A++l ++fe + +va++ +++ +L++++ CCG012979.1 92 IVDALTGKKRFQVIDFSLMaNGRRWCLLLDDYLKQSSDAISFHLTSIGPILSKKGDYLNEILEKLPKEAKKLPIEFEVKHMVASSPAEMVEAALKLER 189 *************863799**********************9999***********************999987777788888887 PP GRAS 199 ...gEalaVnlvlqlhrlldesvsles 222 +E+++V + ++lh+ll+++ sl++ CCG012979.1 190 sseDETIVVRWEFELHKLLAQPESLDN 216 778*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.171	1	354	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.2E-25	8	216	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MAAPGFNKLL DCAKAIEVGD LHLADSLIKD ILTDNDDKLV KYFAEALVRR VYKLYPRNPR 60 PLVPSCTDLR CNMDYQFFPF FWFSELTTRN SIVDALTGKK RFQVIDFSLM ANGRRWCLLL 120 DDYLKQSSDA ISFHLTSIGP ILSKKGDYLN EILEKLPKEA KKLPIEFEVK HMVASSPAEM 180 VEAALKLERS SEDETIVVRW EFELHKLLAQ PESLDNWNQE SAMGDGNIMQ IESSSLLILS 240 GTVRSSAFLE DQPDDEHIIM EGKVWSPECI SINQVAASAE LFDMLEYICH VNYLPLALTW 300 MSDRHILRLE KSACYLNDST MVEFMEACGE QHLEEGKGVA GKALQSNSMY FVSDISKLDV 360 KDYPFIFEAW DFGLRGVVAI KLESVYVSSI DYVVEFFLPL EMKGISGQRL LINEITNILQ 420 KNSRNSWKVC AQELNGFNMS SEVEVTMEEV GTSNIRPAAI SFSPPLALSE IGSLNSSQIR 480 ELCNIFKPTG DGVEVPEAHD QVLDNLRLLF MQL

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MAAPGFNKLL DCAKAIEVGD LHLADSLIKD ILTDNDDKLV KYFAEALVRR VYKLYPRNPR  60
PLVPSCTDLR CNMDYQFFPF FWFSELTTRN SIVDALTGKK RFQVIDFSLM ANGRRWCLLL  120
DDYLKQSSDA ISFHLTSIGP ILSKKGDYLN EILEKLPKEA KKLPIEFEVK HMVASSPAEM  180
VEAALKLERS SEDETIVVRW EFELHKLLAQ PESLDNWNQE SAMGDGNIMQ IESSSLLILS  240
GTVRSSAFLE DQPDDEHIIM EGKVWSPECI SINQVAASAE LFDMLEYICH VNYLPLALTW  300
MSDRHILRLE KSACYLNDST MVEFMEACGE QHLEEGKGVA GKALQSNSMY FVSDISKLDV  360
KDYPFIFEAW DFGLRGVVAI KLESVYVSSI DYVVEFFLPL EMKGISGQRL LINEITNILQ  420
KNSRNSWKVC AQELNGFNMS SEVEVTMEEV GTSNIRPAAI SFSPPLALSE IGSLNSSQIR  480
ELCNIFKPTG DGVEVPEAHD QVLDNLRLLF MQL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372781.2	0.0	uncharacterized protein LOC18106830
Refseq	XP_006373187.2	0.0	uncharacterized protein LOC18107191
Refseq	XP_011043583.1	0.0	PREDICTED: protein NLP8-like
TrEMBL	A0A2K1R7I7	0.0	A0A2K1R7I7_POPTR; Uncharacterized protein
STRING	POPTR_0017s09460.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15862	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	6e-34	Nin-like family protein