PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012978.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 867aa MW: 98600.4 Da PI: 4.8073

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012978.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	213.5	1.1e-65	6	366	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 e L+ecA a+++gdl+ a++l +++ ++s ++ +++++++yf+eAL +rl++ ly p + + ++ l + P+l f+ t CCG012978.1 6 LEKLMECASAIEDGDLKHADSLFKEIGLQSSTEAnLATRKVVKYFAEALVRRLYK----LYPRNPIPLVR-----FREDMDILGCKFEPFLSFASYTI 94 578************************9999856***************....66444444433.....3333444556889****** PP GRAS 99 NqaIleavegeervHiiDfdisq.GlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++a+ g+++vHiiDf++ Q ++L++ Las ++ s RiT vg++ s++ l+ + L+k Ae+ +++fe+ +a++ ++ +L+ CCG012978.1 95 MPPFYDALRGKKQVHIIDFSVAVdIWQHATLMKVLASELGSRLSYRITFVGPKLSKHLGYLKLISLILTKTAENHQIDFEYGEYLANSAGEIVGATLQ 192 ****************975167**********************9999*********************99899999999888888 PP GRAS 196 vkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErel 289 + + gEa++V + ++lh+ll+ + ++ + v++ +k+l+P+v+v+veqeadhns+++++r+ ++++yys++fdsl e ++ r ++ r+ Er CCG012978.1 193 LGRrskGEAVVVEWEFELHKLLAVPNAIFN---LVMSKLKDLKPEVMVIVEQEADHNSPDLMDRLGKSFKYYSVMFDSLeEDTFERLEDYRVLWERN- 286 777778************99999998...******************************************999999999****9. PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++r+i++vva eg ++erhet ++Wr+rl +aGF+p+++ ++ + ++ + yr+ee++ +l+ d p SaW+ CCG012978.1 287 FRRQISKVVAEEGIGHVERHETWAQWRDRLFRAGFHPARILFRE----TMFFNNKT-NQYRIEEKNRRPLLCRLDYPFAISSAWK 366 *********************************9886554....44555544.56***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.339	1	351	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-63	6	366	IPR005202	Transcription factor GRAS
PROSITE profile	PS50600	10.823	578	782	IPR003653	Ulp1 protease family, C-terminal catalytic domain
SuperFamily	SSF54001	9.03E-18	660	780	No hit	No description
Pfam	PF02902	9.6E-14	671	780	IPR003653	Ulp1 protease family, C-terminal catalytic domain
Gene3D	G3DSA:3.30.310.130	8.6E-11	675	777	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
MAPSLLEKLM ECASAIEDGD LKHADSLFKE IGLQSSTEAN LATRKVVKYF AEALVRRLYK 60 LYPRNPIPLV RFREDMDILG CKFEPFLSFA SYTIMPPFYD ALRGKKQVHI IDFSVAVDIW 120 QHATLMKVLA SELGSRLSYR ITFVGPKLSK HLGYLKLISL ILTKTAENHQ IDFEYGEYLA 180 NSAGEIVGAT LQLGRRSKGE AVVVEWEFEL HKLLAVPNAI FNLVMSKLKD LKPEVMVIVE 240 QEADHNSPDL MDRLGKSFKY YSVMFDSLEE DTFERLEDYR VLWERNFRRQ ISKVVAEEGI 300 GHVERHETWA QWRDRLFRAG FHPARILFRE TMFFNNKTNQ YRIEEKNRRP LLCRLDYPFA 360 ISSAWKPDLT HDESISMEIG DLGSMLGSFN IAQDASRESG KASNSVSLED DADDATIMMK 420 GNIWSTECFS INQIAASAEI FDILEYVCHV HDLPMALTWI SDRREDDTNS REKFRLHIVD 480 TACFVNDVGM KGFVEACFEG PPLEEGQGVA GKALQSKMQF VPDVADLDVI DCPFLHVAWE 540 FGLHAVLAIK LASTYMSSVD YILELVFPLE MREISEQLVL TKEIILTLTE NCGNSWRLWG 600 NETGIEEAGK SDKTAAIVSG SSPRGFSDFG GLNTEDIIIA LDGCLSDGHD EQEHAYDTSE 660 CISFAKKHMF RENYMSALFS CEKMYVPVFD KERRHFYLFV LHMKKQVVEI WDSLAKSSCS 720 SVDKRLPNVL AILDILFEDD IKQNYPDGWS FASFSLDRSP NVPQQTNGYD CGVYVIKFML 780 APEEATQTDF VFDSDTERLD VVLRLLNGNV NSCRNELAAK AEAYFLRSSG TNDSLRIYVQ 840 NMDEETANKY SMLKGIDAVV NPALNQM

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

MAPSLLEKLM ECASAIEDGD LKHADSLFKE IGLQSSTEAN LATRKVVKYF AEALVRRLYK  60
LYPRNPIPLV RFREDMDILG CKFEPFLSFA SYTIMPPFYD ALRGKKQVHI IDFSVAVDIW  120
QHATLMKVLA SELGSRLSYR ITFVGPKLSK HLGYLKLISL ILTKTAENHQ IDFEYGEYLA  180
NSAGEIVGAT LQLGRRSKGE AVVVEWEFEL HKLLAVPNAI FNLVMSKLKD LKPEVMVIVE  240
QEADHNSPDL MDRLGKSFKY YSVMFDSLEE DTFERLEDYR VLWERNFRRQ ISKVVAEEGI  300
GHVERHETWA QWRDRLFRAG FHPARILFRE TMFFNNKTNQ YRIEEKNRRP LLCRLDYPFA  360
ISSAWKPDLT HDESISMEIG DLGSMLGSFN IAQDASRESG KASNSVSLED DADDATIMMK  420
GNIWSTECFS INQIAASAEI FDILEYVCHV HDLPMALTWI SDRREDDTNS REKFRLHIVD  480
TACFVNDVGM KGFVEACFEG PPLEEGQGVA GKALQSKMQF VPDVADLDVI DCPFLHVAWE  540
FGLHAVLAIK LASTYMSSVD YILELVFPLE MREISEQLVL TKEIILTLTE NCGNSWRLWG  600
NETGIEEAGK SDKTAAIVSG SSPRGFSDFG GLNTEDIIIA LDGCLSDGHD EQEHAYDTSE  660
CISFAKKHMF RENYMSALFS CEKMYVPVFD KERRHFYLFV LHMKKQVVEI WDSLAKSSCS  720
SVDKRLPNVL AILDILFEDD IKQNYPDGWS FASFSLDRSP NVPQQTNGYD CGVYVIKFML  780
APEEATQTDF VFDSDTERLD VVLRLLNGNV NSCRNELAAK AEAYFLRSSG TNDSLRIYVQ  840
NMDEETANKY SMLKGIDAVV NPALNQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-17	11	367	25	380	Protein SCARECROW
5b3h_A	2e-17	11	367	24	379	Protein SCARECROW
5b3h_D	2e-17	11	367	24	379	Protein SCARECROW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043655.1	0.0	PREDICTED: uncharacterized protein LOC105139054

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20629	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	7e-64	GRAS family protein