PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012914.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 394aa    MW: 44860.8 Da    PI: 4.3674
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012914.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.12.6e-14163247286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+ +L++a  e+  + ++++l+   W+ev++k+  + ++er+ +qC+++++ l+k+yk ++    +   +  s+++yf++++
  CCG012914.1 163 WTEHETFVLLDAWGEKFLQRGKKSLRSDEWQEVAEKVsDKSKIERTDTQCRNRLDTLKKKYKIERIKLAED-GGGASKWVYFKKMD 247
                  *************************************667789*******************999999986.667779*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-21162248No hitNo description
Gene3DG3DSA:1.10.10.604.0E-4162233IPR009057Homeodomain-like
PROSITE profilePS500906.481163220IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDDTEDDARY PQNPYGENNQ RSYGSNRHKL PVGNATYSRP VDNQHAVGED EDSDDEEEGE  60
HELGDEDGEN NQNNGIHYVG KDVDDEEEEE GVNDEEDGDD NEEYSRGIVD DDEDDDIERH  120
PKKRKLKSLV SSYEFAPRVP LPPVAALAVP KPSVGGRNPL TDWTEHETFV LLDAWGEKFL  180
QRGKKSLRSD EWQEVAEKVS DKSKIERTDT QCRNRLDTLK KKYKIERIKL AEDGGGASKW  240
VYFKKMDVLM STSAQQGGLS CGMDSGEYVS MNPKVYSNHS SGFDEMRDSP GNSELARDED  300
DSDGLPPKKR RLGRDCIEQS PFGLLADSIH KFSEIYEKIE SSKRQQMLEL EKMRMDFQRD  360
LEMQKRQIIE RAQAAIARIH QVDEEEDSIS ANSA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247870.0CU224787.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002690.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A3N7FTG40.0A0A3N7FTG4_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.16e-65Trihelix family protein