PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012899.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 346aa MW: 38152.7 Da PI: 6.7272

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012899.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.2	5.1e-33	22	137	2	113
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg........k 89 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+ ++sk ++WL+++ak +i++l ++ +++a++++a+ + ++++ ss+ + CCG012899.1 22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYYRPSKPVDWLIKKAKSSIDKLDELppWQPAANNANANLEANQNAGSSEMaigeetesS 119 79**************************************************************8755555555333333333333333554433332 PP TCP 90 aaksaakskksqksaasalnlake 113 +++ +++ ++ +n++++ CCG012899.1 120 GYTFQLHRQLTD------HNPSND 137 222222222222......333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-30	22	132	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.819	24	82	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGMKSTAGEI IQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YYRPSKPVDW LIKKAKSSID KLDELPPWQP AANNANANLE ANQNAGSSEM AIGEETESSG 120 YTFQLHRQLT DHNPSNDSSF LAPTIDPDAM KSFFPTSSTN SSMNFQSYPT VISRTTNHTE 180 DLGLSLHSFQ DQGLLHGQSQ ADTTQTPSTD DQTLFEGSAT VGFDANFHRM LAWSNDTNAE 240 NRVVGGFTFN PPPLTTHQAM QAQASAFSQR GPLQSSFPHS IRSWNDLHMA STDHHRTQEF 300 HQSLIFGSRF VSDGLSGFSI PARIHGGDEQ NVVSDRPSSS SPNSQN

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGMKSTAGEI IQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YYRPSKPVDW LIKKAKSSID KLDELPPWQP AANNANANLE ANQNAGSSEM AIGEETESSG  120
YTFQLHRQLT DHNPSNDSSF LAPTIDPDAM KSFFPTSSTN SSMNFQSYPT VISRTTNHTE  180
DLGLSLHSFQ DQGLLHGQSQ ADTTQTPSTD DQTLFEGSAT VGFDANFHRM LAWSNDTNAE  240
NRVVGGFTFN PPPLTTHQAM QAQASAFSQR GPLQSSFPHS IRSWNDLHMA STDHHRTQEF  300
HQSLIFGSRF VSDGLSGFSI PARIHGGDEQ NVVSDRPSSS SPNSQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-20	29	82	1	54	Putative transcription factor PCF6
5zkt_B	2e-20	29	82	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002677.1	0.0	PREDICTED: transcription factor TCP4-like
Swissprot	Q8LPR5	5e-69	TCP4_ARATH; Transcription factor TCP4
TrEMBL	B9IQQ7	0.0	B9IQQ7_POPTR; Uncharacterized protein
STRING	POPTR_0019s12110.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	2e-63	TCP family protein

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]