PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG012823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 310aa MW: 35358.9 Da PI: 8.4415 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.5 | 2.7e-49 | 30 | 158 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...k 96 pGfrFhPtdeelv +yL++kv++k+l++ e ik+vdiyk++PwdLpk + +e+e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s + CCG012823.1 30 LPGFRFHPTDEELVGFYLRRKVDKKPLNI-ELIKQVDIYKYDPWDLPKPSSVGENEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSLggeG 126 59***************************.89***************87777999**************************************86545 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLv+y+g+a kg+ktdW+mhe+rl CCG012823.1 127 RDCIGLKKTLVYYRGNAGKGTKTDWMMHEFRL 158 555***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.761 | 29 | 191 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.55E-55 | 29 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-25 | 31 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MVEKAMSMNN CQGHISSTNY KDDGVEEAQL PGFRFHPTDE ELVGFYLRRK VDKKPLNIEL 60 IKQVDIYKYD PWDLPKPSSV GENEGYFFCK RGRKYRNSIR PNRVTGSGFW KATGIDKPVY 120 SLGGEGRDCI GLKKTLVYYR GNAGKGTKTD WMMHEFRLPA SDNNTSSTAI AKAEISPQEA 180 EVWTLCRIFK RNVSYRKYTP DWRQLSTKCQ QPPIDTSSKI CSPVDSNYKQ ESYVSFGAPL 240 NQHYDNKPTA GSHAIERKPL HLDQLSHIAQ PPSMASSSNM SSPYMHEIFT HGDWDELRSV 300 VECAFDPFLM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 31 | 197 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 31 | 197 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 31 | 197 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 31 | 197 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-47 | 31 | 197 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 31 | 197 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC216685 | 0.0 | AC216685.1 Populus trichocarpa clone POP033-J03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015092.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 7e-86 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2K1ZQB4 | 0.0 | A0A2K1ZQB4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s10080.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12910.1 | 2e-88 | NAC family protein |