PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012698.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 300aa    MW: 33026.3 Da    PI: 8.2913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012698.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068121143123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  CCG012698.1 121 YECKTCNRTFPSFQALGGHRASH 143
                  99**********99999998887 PP
2zf-C2H212.60.00041198220123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg  F++   L  H+r+H
  CCG012698.1 198 HECSVCGAEFTSGQALGGHMRRH 220
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.7E-13120145IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-7120143No hitNo description
SMARTSM003550.052121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-7193220No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4196222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012198220IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-13198222IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.284198222IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEASEEVAAN VVKGKRTKRL RVQSPIPYGL TANSSSGDGG TSWSPTSSVN EFQDSTEEEE  60
DMANCLILLA KGHSRDFPTQ QQHRQDYDSR GGGAYTTKFN SRKFLETANS TGSGKVGYYV  120
YECKTCNRTF PSFQALGGHR ASHKKPKATH NDERKKNLSP SSDEEDGHYK NVSSLCLQLS  180
DNNANRGTFS NHNKGKIHEC SVCGAEFTSG QALGGHMRRH RGPLLSSTTT LSLTPLANES  240
EEPKKARNAL SLDLDLNLPA PEDEKFAFAS KKQQQQQHQQ QQQQNTPLVF SSPALVGCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024338.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A2K1YYY30.0A0A2K1YYY3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23610.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.18e-70C2H2 family protein