PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012559.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 451aa MW: 50730 Da PI: 4.8754

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012559.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.3e-13	132	154	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G +CkF+H+ CCG012559.2 132 EDCAFYMKTGTCKFGVNCKFNHP 154 89********************9 PP
2	zf-CCCH	26.5	1.1e-08	160	178	7	25
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++rtG CkyG+ C+F+H CCG012559.2 160 QYYLRTGGCKYGEACRFNH 178 59***************** PP
3	zf-CCCH	35.6	1.6e-11	209	233	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C f++r+G CkyG++Ck++H+ CCG012559.2 209 GEKQCEFYMRNGSCKYGATCKYNHP 233 6788********************9 PP
4	zf-CCCH	26	1.6e-08	342	367	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ lC++f+++G Ck+ ++Ck++H++ CCG012559.2 342 GQQLCSYFMKFGDCKFKSNCKYHHPK 367 788*********************96 PP
5	zf-CCCH	35.8	1.3e-11	391	412	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++r+G+Ck+G+ CkF H+ CCG012559.2 391 ICSYYSRYGICKFGPACKFDHS 412 8********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.49E-6	127	157	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-6	128	155	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.089	128	156	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-10	132	154	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.4E-5	134	153	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.82	158	180	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.93	160	181	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-6	160	178	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	161	181	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7E-5	207	234	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.263	207	235	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.98E-6	209	234	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-9	209	233	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	212	232	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.615	340	368	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-4	340	367	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.6E-6	342	367	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.11E-5	343	369	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.5E-5	386	413	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.68	386	414	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	388	414	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	391	413	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-9	391	412	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MEKQIELPIQ IQTEIPQLGL QPSSSLPPSH PGTSPSSEPD QTAQDDDNYL HQELQNQLDL 60 REEFKELNDF HEEEEEELES EEGDEKSEIF YEIDNESIEK EGDDLEKKNE RSDENANNNR 120 RYHQYPVRPE AEDCAFYMKT GTCKFGVNCK FNHPVRRKNQ YYLRTGGCKY GEACRFNHTR 180 EKTSSVSPLK TPMPSILELN FLGLPIRPGE KQCEFYMRNG SCKYGATCKY NHPDPMAAGG 240 SDLTSAFVNG GTASLPAPSP SSVGSWSSPR ALNDPTPFVP YVFSPTRLPS QSSEWNGYQG 300 TLYPPERMHP PPSYAMSNPA TESNVYAPQQ QQTVDEFPER PGQQLCSYFM KFGDCKFKSN 360 CKYHHPKNRI PKSPSLTLSD KGLPLRPDQI ICSYYSRYGI CKFGPACKFD HSIQPPSSGS 420 GDDQHTAFGN SVTQEEARMA ESGNGSDISV E

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MEKQIELPIQ IQTEIPQLGL QPSSSLPPSH PGTSPSSEPD QTAQDDDNYL HQELQNQLDL  60
REEFKELNDF HEEEEEELES EEGDEKSEIF YEIDNESIEK EGDDLEKKNE RSDENANNNR  120
RYHQYPVRPE AEDCAFYMKT GTCKFGVNCK FNHPVRRKNQ YYLRTGGCKY GEACRFNHTR  180
EKTSSVSPLK TPMPSILELN FLGLPIRPGE KQCEFYMRNG SCKYGATCKY NHPDPMAAGG  240
SDLTSAFVNG GTASLPAPSP SSVGSWSSPR ALNDPTPFVP YVFSPTRLPS QSSEWNGYQG  300
TLYPPERMHP PPSYAMSNPA TESNVYAPQQ QQTVDEFPER PGQQLCSYFM KFGDCKFKSN  360
CKYHHPKNRI PKSPSLTLSD KGLPLRPDQI ICSYYSRYGI CKFGPACKFD HSIQPPSSGS  420
GDDQHTAFGN SVTQEEARMA ESGNGSDISV E

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU223337	0.0	CU223337.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024098.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
Swissprot	Q9STM4	1e-119	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A2K1XK95	0.0	A0A2K1XK95_POPTR; Uncharacterized protein
STRING	POPTR_0012s09400.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4156	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-115	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]