PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012541.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 517aa    MW: 57520.8 Da    PI: 6.6207
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012541.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.53.4e-1151465161374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++L  rl+  ++ + +  +p+ +  +  s+++  al+l +e++P ++f+h++
  CCG012541.1 146 LVQLLIACAEAVACRDKSHASALLSELRSNALVFGSSFQRVASCFVQGLTDRLSLVQPlGAVGFVPTMNIMDIASDKKEEALRLVYEICPHIRFGHFV 243
                  689***************************************************9443144445566666666699999******************* PP

         GRAS  98 aNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  aN+aIlea+ege+ vH++D+++    s+G QW  L+++La+R++++p +lRiTgvg       ++ + +g+ L+++A+ +g+++ef++ v+++le+l+
  CCG012541.1 244 ANNAILEAFEGESSVHVVDLGMtlglSHGHQWRRLIESLAERAGKAPsRLRITGVGL----CVDRFRIIGDGLTEYAKDMGINLEFSA-VESNLENLR 336
                  *******************87522227999*************877769********....***************************.79******* PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                  +e++++k+gE+l+Vn++lqlh +++es    +   +vL++v +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++
  CCG012541.1 337 PEDIKIKEGEVLVVNSILQLHCVVKESRGALN---SVLQIVHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQF 431
                  ************************88877777...8************************************************************** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  +++qak  l k k  dgy+v ee+g+lvlgWk++p++++S+W+
  CCG012541.1 432 YFAEEIKNIVSCEGPARVERHERVYQWRRRMSRAGFQAAPIK--MVAQAKQWLVKNKvCDGYTVVEEKGCLVLGWKSKPIIAASCWK 516
                  ****************************************97..677899888888889***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.051120497IPR005202Transcription factor GRAS
PfamPF035141.2E-112146516IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAHSFLSGEF NDENISETSG LDLSLSAMAC YPRPPYLPTF DSNGVSWILP FLDDTRDAKR  60
MRRSSSLVES IRSNNSSLCS TGGSSICRSI STNILNSIPK LHFRDHIWTY TQRYLAAEAV  120
EEAASEAMIN ADEGGNEEGN ADGMRLVQLL IACAEAVACR DKSHASALLS ELRSNALVFG  180
SSFQRVASCF VQGLTDRLSL VQPLGAVGFV PTMNIMDIAS DKKEEALRLV YEICPHIRFG  240
HFVANNAILE AFEGESSVHV VDLGMTLGLS HGHQWRRLIE SLAERAGKAP SRLRITGVGL  300
CVDRFRIIGD GLTEYAKDMG INLEFSAVES NLENLRPEDI KIKEGEVLVV NSILQLHCVV  360
KESRGALNSV LQIVHELSPK VLVLVEQDSS HNGPFFLGRF MEALHYYSAI FDSLDAMLPK  420
YDTRRAKMEQ FYFAEEIKNI VSCEGPARVE RHERVYQWRR RMSRAGFQAA PIKMVAQAKQ  480
WLVKNKVCDG YTVVEEKGCL VLGWKSKPII AASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6415351525377Protein SCARECROW
5b3h_D2e-6415351525377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024077.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLB9IF610.0B9IF61_POPTR; Uncharacterized protein
STRINGPOPTR_0015s10310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-80RGA-like 1