PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG012541.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 517aa MW: 57520.8 Da PI: 6.6207 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376.5 | 3.4e-115 | 146 | 516 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPilkfshlt 97 lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++L rl+ ++ + + +p+ + + s+++ al+l +e++P ++f+h++ CCG012541.1 146 LVQLLIACAEAVACRDKSHASALLSELRSNALVFGSSFQRVASCFVQGLTDRLSLVQPlGAVGFVPTMNIMDIASDKKEEALRLVYEICPHIRFGHFV 243 689***************************************************9443144445566666666699999******************* PP GRAS 98 aNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN+aIlea+ege+ vH++D+++ s+G QW L+++La+R++++p +lRiTgvg ++ + +g+ L+++A+ +g+++ef++ v+++le+l+ CCG012541.1 244 ANNAILEAFEGESSVHVVDLGMtlglSHGHQWRRLIESLAERAGKAPsRLRITGVGL----CVDRFRIIGDGLTEYAKDMGINLEFSA-VESNLENLR 336 *******************87522227999*************877769********....***************************.79******* PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +e++++k+gE+l+Vn++lqlh +++es + +vL++v +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E++ CCG012541.1 337 PEDIKIKEGEVLVVNSILQLHCVVKESRGALN---SVLQIVHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQF 431 ************************88877777...8************************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++ +++qak l k k dgy+v ee+g+lvlgWk++p++++S+W+ CCG012541.1 432 YFAEEIKNIVSCEGPARVERHERVYQWRRRMSRAGFQAAPIK--MVAQAKQWLVKNKvCDGYTVVEEKGCLVLGWKSKPIIAASCWK 516 ****************************************97..677899888888889***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.051 | 120 | 497 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-112 | 146 | 516 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MAHSFLSGEF NDENISETSG LDLSLSAMAC YPRPPYLPTF DSNGVSWILP FLDDTRDAKR 60 MRRSSSLVES IRSNNSSLCS TGGSSICRSI STNILNSIPK LHFRDHIWTY TQRYLAAEAV 120 EEAASEAMIN ADEGGNEEGN ADGMRLVQLL IACAEAVACR DKSHASALLS ELRSNALVFG 180 SSFQRVASCF VQGLTDRLSL VQPLGAVGFV PTMNIMDIAS DKKEEALRLV YEICPHIRFG 240 HFVANNAILE AFEGESSVHV VDLGMTLGLS HGHQWRRLIE SLAERAGKAP SRLRITGVGL 300 CVDRFRIIGD GLTEYAKDMG INLEFSAVES NLENLRPEDI KIKEGEVLVV NSILQLHCVV 360 KESRGALNSV LQIVHELSPK VLVLVEQDSS HNGPFFLGRF MEALHYYSAI FDSLDAMLPK 420 YDTRRAKMEQ FYFAEEIKNI VSCEGPARVE RHERVYQWRR RMSRAGFQAA PIKMVAQAKQ 480 WLVKNKVCDG YTVVEEKGCL VLGWKSKPII AASCWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-64 | 153 | 515 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-64 | 153 | 515 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024077.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | B9IF61 | 0.0 | B9IF61_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s10310.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8730 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-80 | RGA-like 1 |