PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012473.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 381aa    MW: 41870.5 Da    PI: 8.9178
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012473.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1344.7e-4293170178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +C v+gC++dls++++yhrrhkvCe hsk+p+v+v g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  CCG012473.1  93 MCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTVGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170
                  6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3487155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.05291168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-3992173IPR004333Transcription factor, SBP-box
PfamPF031104.3E-3194167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDWNLKATSW DLTEFEQGAV PSISIDAFDR STSFGVNRSG GGFSIDLKLG RVGNSSDESI  60
INWKQPGVSK LQPLPSGSTK RARGANSGTQ VAMCLVDGCN SDLSTCRDYH RRHKVCELHS  120
KTPQVTVGGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP DPHSRSPSFL  180
SNYQGAQLFS FSSSHVYPSS TVLNPMWSGV ASTEADGRHR NLHQLPDKQN LFFGSSSSSY  240
HGGKQFPFLQ CHSPGLNNQT SPEASVCQPL LRTIPLPGSR GASSHSMFCD RLTQIQDSDC  300
ALSLLSSTQT HASGNLMVQH NSVPLSHPIG PTVHDHGLRP IDSVLVFNNR DANVHFPGTF  360
QPQSGGSSGN KAPQTLPFNW E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2884167184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023967.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_011023968.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_011023969.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_011023970.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_011023971.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_011023973.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_011023974.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_011023975.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_011023976.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_011023977.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A2K1XKS20.0A0A2K1XKS2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-66SBP family protein