PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG012390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 377aa MW: 41310.9 Da PI: 6.8767 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.4 | 2.3e-29 | 53 | 164 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............ 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k+ i++l+ ++ ++ + ++ + +++s+++ CCG012390.1 53 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDATKTDIDKLPPLQMPPGFG-QFHQPVLFSHQSNIAspffdpnstfik 149 79*************************************************************7777622.333444444444444444444445555 PP TCP 89 ..............k 89 CCG012390.1 150 dvgynslgikidtgT 164 555555555443330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-26 | 54 | 161 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.874 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MISNSEDMDL QGKQAGGCGS EADKISEATS STSSRQWSAF RNPRIVRVSR SFGGKDRHSK 60 VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVIDW LLDATKTDID KLPPLQMPPG 120 FGQFHQPVLF SHQSNIASPF FDPNSTFIKD VGYNSLGIKI DTGTAGLDGQ VQNSSTTMPR 180 SSYSRDIEAS IRAKSKQDGT ITEKGKSIKT NEDGEIGSYS STGQVPAQNF FPSANRSTIP 240 SLLYNSTVPF NSYHWDASNL SLSTQFGSHG FISQTENSLD TPSSLPLSSG SQLFFCPPPP 300 MPSLFPSYRP CVITPSENES RDMNHFQLLS SSSSQHILPI SLTMNSTTKP FSLNLNPGLL 360 RLQKNNESNP DEDDAES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU282258 | 0.0 | GU282258.1 Populus balsamifera isolate RNA13 haplotype A putative TCP family transcription factor gene, partial sequence. | |||
GenBank | GU282259 | 0.0 | GU282259.1 Populus balsamifera isolate RNA13 haplotype B putative TCP family transcription factor gene, partial sequence. | |||
GenBank | GU282260 | 0.0 | GU282260.1 Populus balsamifera isolate INU03 haplotype A putative TCP family transcription factor gene, partial sequence. | |||
GenBank | GU282262 | 0.0 | GU282262.1 Populus balsamifera isolate NWL07 haplotype A putative TCP family transcription factor gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015070.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_011015071.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | A0A2K1XIN3 | 0.0 | A0A2K1XIN3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s06980.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 9e-52 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |