PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG012227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YB | ||||||||
Protein Properties | Length: 185aa MW: 20083.2 Da PI: 6.2734 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 178.2 | 7.5e-56 | 24 | 119 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqd++lPianvsrimkk+lPanakiskd ketvqecvsefisf+t+easdkcqrekrkt+ngddllwa++tlGfedy+eplk+yl+k+re+ege+ CCG012227.1 24 REQDKLLPIANVSRIMKKALPANAKISKDGKETVQECVSEFISFITGEASDKCQREKRKTVNGDDLLWAMTTLGFEDYAEPLKIYLQKFRETEGER 119 89********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.0E-52 | 18 | 130 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-38 | 26 | 129 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.7E-26 | 30 | 93 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.1E-21 | 57 | 75 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 60 | 76 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.1E-21 | 76 | 94 | No hit | No description |
PRINTS | PR00615 | 3.1E-21 | 95 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MADSDNESGG QNNNNTNYSE TSSREQDKLL PIANVSRIMK KALPANAKIS KDGKETVQEC 60 VSEFISFITG EASDKCQREK RKTVNGDDLL WAMTTLGFED YAEPLKIYLQ KFRETEGERT 120 AAMGTVRQGD QRDGSVVNSG DSGGGFGGNG GNVYGGMQSR MMMMGQGHHP LHQGNMYGSA 180 SGRPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 6e-48 | 24 | 114 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 6e-48 | 24 | 114 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210129 | 1e-143 | AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002366.1 | 1e-137 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 3e-70 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2K1ZUS6 | 1e-106 | A0A2K1ZUS6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s00730.1 | 1e-107 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 3e-66 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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