PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012225.4

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 354aa MW: 39559.1 Da PI: 5.739

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012225.4	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.4	1.5e-12	246	309	23	86
trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +g++ + W+++s+ m g++ ++k Ckekwen+nk +kk + k+ e+ + p f++l+ CCG012225.4 246 TGSKGTNIWDAISDGMCNMGYNCTAKNCKEKWENINKHFKKSVGSVVKKPFENITVSPCFHELD 309 46677889*********************************99988888777777788888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.8E-11	241	309	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDLLAADDRQ IRNPNDFPLH LIPFPPTGNF DISTSAAAVV GSSDVDSLLP QKLRPIRGNG 60 RVPSGYAEDG REKLWGFVSG EASDVAVNGG GGLGLGSVED DWLFYKLRDS LNQDWIMLIL 120 CSCDGNADDS SVGAGESVGQ KRKRRSKRKI EKFLESLVMK VMEKQEEMHK QLVEMIESSE 180 RETMIREEAW KQQAMERMER DSEARAQETT RNLALISFIQ NMTGHVIEVS NGGNAPTQNH 240 FQLQVTGSKG TNIWDAISDG MCNMGYNCTA KNCKEKWENI NKHFKKSVGS VVKKPFENIT 300 VSPCFHELDV LYNNGLLIWE TALPIQAIKL NALLVKVEML KPFQVFVFSN LTLT

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDLLAADDRQ IRNPNDFPLH LIPFPPTGNF DISTSAAAVV GSSDVDSLLP QKLRPIRGNG  60
RVPSGYAEDG REKLWGFVSG EASDVAVNGG GGLGLGSVED DWLFYKLRDS LNQDWIMLIL  120
CSCDGNADDS SVGAGESVGQ KRKRRSKRKI EKFLESLVMK VMEKQEEMHK QLVEMIESSE  180
RETMIREEAW KQQAMERMER DSEARAQETT RNLALISFIQ NMTGHVIEVS NGGNAPTQNH  240
FQLQVTGSKG TNIWDAISDG MCNMGYNCTA KNCKEKWENI NKHFKKSVGS VVKKPFENIT  300
VSPCFHELDV LYNNGLLIWE TALPIQAIKL NALLVKVEML KPFQVFVFSN LTLT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210129	1e-107	AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002364.1	1e-141	PREDICTED: uncharacterized protein LOC105109364
TrEMBL	A0A2K1ZUS3	1e-128	A0A2K1ZUS3_POPTR; Uncharacterized protein
STRING	POPTR_0006s00710.1	1e-168	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF39377	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	3e-30	Trihelix family protein