PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG012223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YB | ||||||||
Protein Properties | Length: 234aa MW: 26119.9 Da PI: 6.646 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 172.3 | 5.3e-54 | 54 | 150 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrf+Pianv+rim+k+lP++akis+daket+qecvse+isf+tsea+++cqre+rkti+++d+l+a+++lGf+dy+epl++yl++yrel+ge+ CCG012223.1 54 VREQDRFMPIANVIRIMRKILPSHAKISDDAKETIQECVSEYISFITSEANERCQREQRKTITAEDVLYAMSKLGFDDYIEPLTIYLHRYRELDGER 150 69********************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-50 | 52 | 155 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.55E-38 | 57 | 154 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-25 | 60 | 124 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.9E-17 | 88 | 106 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 91 | 107 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.9E-17 | 107 | 125 | No hit | No description |
PRINTS | PR00615 | 1.9E-17 | 126 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDRRGGFHGY RELLNTSSEI NMRLTAEINH SSSSNNSNIN VHATTDDINE CSTVREQDRF 60 MPIANVIRIM RKILPSHAKI SDDAKETIQE CVSEYISFIT SEANERCQRE QRKTITAEDV 120 LYAMSKLGFD DYIEPLTIYL HRYRELDGER GSMRCDPLVK STRNNNNNNN VDQFGALAGV 180 GAYAPAFHAS HHHHGFFGGS PIGAGYMNTR DANPNASSSH AAALANVEAF AQHK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 5e-61 | 53 | 145 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210129 | 1e-157 | AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002415.1 | 1e-148 | PREDICTED: nuclear transcription factor Y subunit B-6 | ||||
Swissprot | Q84W66 | 3e-70 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A2K1ZUS4 | 1e-142 | A0A2K1ZUS4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s00690.1 | 1e-113 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 8e-70 | nuclear factor Y, subunit B6 |