PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG012198.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 13758.3 Da PI: 11.6275 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.2 | 9.7e-16 | 10 | 90 | 9 | 87 |
HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 9 dvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 + +++rl++p +f+++ g+ ++ +de+g+ W +++++rk+++ vlt+GW Fvk+++L++gD v F +r CCG012198.1 10 KTDTKKRLSVPTRFLRSLppfklGS---HAVKFEATDEKGEAWPFQCSIRKRGQYpkPVLTRGWVAFVKSKKLRVGDKVRFI--KR 90 4556778*********999985332...456788889**********9988888889**********************998..22 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.812 | 2 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-19 | 4 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.0E-6 | 4 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-14 | 5 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.94E-18 | 6 | 87 | No hit | No description |
Pfam | PF02362 | 7.4E-13 | 11 | 94 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 120 aa Download sequence Send to blast |
MAQVSKILKK TDTKKRLSVP TRFLRSLPPF KLGSHAVKFE ATDEKGEAWP FQCSIRKRGQ 60 YPKPVLTRGW VAFVKSKKLR VGDKVRFIKR ENRATATISY KVRAEKAIKI FGATFGYARI |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 1e-152 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003897.1 | 2e-82 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | U7DXJ1 | 2e-69 | U7DXJ1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0492s00200.1 | 3e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34390.1 | 7e-09 | auxin response factor 22 |