PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG012174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24651.2 Da PI: 7.7307 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.7 | 6.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien snrqvt+skR+ngi+KKA+E+ vLCda+v+++if+s+g+++ey+s CCG012174.1 9 KRIENASNRQVTYSKRKNGIIKKAKEITVLCDAQVSLVIFASSGRMHEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 70.9 | 4e-24 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 y+k+sg++l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL + eL+ +e++L+ +l +R+k++e+ + ++ ++ +e ++ + L+++ CCG012174.1 71 YHKQSGQRLWDAKHENLSKEIDRIKKENDSMQIELRHLKGEDISSLHHTELMAIEEALDAGLAAVRKKQMEYHSMLEQNEKMLDEEFKRLQFVLQQQE 168 8999*******************************************************************9999999999999***99999999986 PP K-box 99 e 99 + CCG012174.1 169 M 169 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.889 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.41E-40 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 7.85E-35 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.7E-16 | 82 | 162 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.649 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRGKIEIKR IENASNRQVT YSKRKNGIIK KAKEITVLCD AQVSLVIFAS SGRMHEYCSP 60 STTVVDLLDK YHKQSGQRLW DAKHENLSKE IDRIKKENDS MQIELRHLKG EDISSLHHTE 120 LMAIEEALDA GLAAVRKKQM EYHSMLEQNE KMLDEEFKRL QFVLQQQEMA MGENAMEMEN 180 AYHQQRVRDY NSQVPFAFRV QPIQPNLQER M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6byy_A | 1e-16 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-16 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-16 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-16 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-16 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-16 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU029172 | 0.0 | EU029172.1 Populus deltoides MADS box transcription factor (PI) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002438.1 | 1e-157 | PREDICTED: floral homeotic protein PMADS 2-like isoform X1 | ||||
Swissprot | Q0HA25 | 1e-121 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A7LK41 | 1e-153 | A7LK41_POPDE; MADS box transcription factor | ||||
STRING | POPTR_0005s20480.1 | 1e-154 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4355 | 32 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 5e-83 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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