PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG012167.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 141aa MW: 15783.8 Da PI: 7.0274 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.9 | 8.1e-09 | 17 | 38 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++ +tG C+ G++C+++H++ CCG012167.1 17 CPTYEATGSCPQGSKCNRHHPK 38 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.06E-5 | 10 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.507 | 11 | 39 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-4 | 16 | 33 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 17 | 38 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MQYNSAIQCL KKHSYVCPTY EATGSCPQGS KCNRHHPKNR SKEKKSKRSR DNNAQGRYFG 60 LMHTSTTELR NPVPVKPNVL DNDAISFKGS IADYISLDVI DEVVENTIPA DEHTALGDSD 120 PLELQLGDLD ELIKPVRIMN I |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002423.1 | 1e-102 | PREDICTED: zinc finger CCCH domain-containing protein 7-like | ||||
TrEMBL | A0A3N7F0J2 | 4e-81 | A0A3N7F0J2_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7F5X4 | 3e-81 | A0A3N7F5X4_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7FW99 | 3e-81 | A0A3N7FW99_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s07810.1 | 2e-61 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6103 | 10 | 10 |