PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012160.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 213aa    MW: 23770.7 Da    PI: 9.6071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012160.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14693187
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87
                 f+k+l  s +  + r+++p k ++++   gg+   sk+  ++d +g++W+++++ rk++++   vl++GW e +k  gLkegD v+F+ ++ 
  CCG012160.1  6 FEKKL--SKTDIEYRMSVPMKSLDDFqipGGE--HSKDFGVTDIHGKRWRFRCSTRKSDRHpkPVLSSGWVESAKKRGLKEGDEVTFSAVDM 93
                 78888..555566679*******999997666..6779999************98888888999************************6543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.7561107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-16292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-12393IPR015300DNA-binding pseudobarrel domain
CDDcd100176.07E-16488No hitNo description
SMARTSM010190.00516107IPR003340B3 DNA binding domain
PfamPF023622.5E-11693IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MPKHLFEKKL SKTDIEYRMS VPMKSLDDFQ IPGGEHSKDF GVTDIHGKRW RFRCSTRKSD  60
RHPKPVLSSG WVESAKKRGL KEGDEVTFSA VDMKGAEDLE LGIQARKKFK LFDEVLRRNG  120
GAGVSGDKAA DAREGVVLLL ELEEARVAGT GACSRCMEVV ELLLILTILV LSSVKVFVPL  180
HPIKACAFPK QKPWSLETQQ IFGVRRIVCQ CSS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139261e-161AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141001e-161AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452199.16e-68putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2K2AZW31e-66A0A2K2AZW3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00450.11e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.13e-07auxin response factor 4