PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012159.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 121aa    MW: 13946.4 Da    PI: 10.4101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012159.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.7e-15695188
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88
                 f k+l  s +  + r+ +p k ++++   +gk   sk+  ++d +g++W+++++ rk++     vl++GW eF+k   Lk+gD v+F+++g  +
  CCG012159.1  6 FTKKL--SKTDIEYRMAVPMKSLDAFqipEGK--HSKEFGVTDIHGKRWRFRCCTRKTDPYpkPVLSSGWIEFAKTRSLKVGDEVTFSVVGMkR 95
                 67888..555555679*******999766555..6789***************77666655889************************775422 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-18392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-16494IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.5034107IPR003340B3 DNA binding domain
CDDcd100173.11E-17588No hitNo description
PfamPF023624.9E-126101IPR003340B3 DNA binding domain
SMARTSM010190.00226107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MPEILFTKKL SKTDIEYRMA VPMKSLDAFQ IPEGKHSKEF GVTDIHGKRW RFRCCTRKTD  60
PYPKPVLSSG WIEFAKTRSL KVGDEVTFSV VGMKRAEDLE LGIQARKKIK LFGKVLWSDP  120
L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139261e-149AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141001e-149AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002453.18e-85PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
RefseqXP_011002454.18e-85PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
TrEMBLA0A3N7F9A77e-77A0A3N7F9A7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00450.19e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.27e-08related to ABI3/VP1 2