PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012156.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 288aa    MW: 32109.9 Da    PI: 8.797
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012156.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.1e-10589188
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                 f k+l  +d   ++rl l+ ++++++  g    +  l+++de+g++W++++++  +++++  l++ W  Fv++++Lk+gD++ + ld+++
  CCG012156.1  5 FTKKL--NDIDIERRLLLSENCIKDFpRGH---EAYLKFKDEDGQVWTFRCRVpPGGGSKPALSGDWFVFVRSKHLKVGDVIEIALDREK 89
                 66777..66677788999999999995333...346***************99544444599********************99988764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.0511107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-12490IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-11589IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-55107IPR003340B3 DNA binding domain
CDDcd100171.45E-15589No hitNo description
PfamPF023623.0E-8789IPR003340B3 DNA binding domain
SuperFamilySSF547688.93E-12100170No hitNo description
CDDcd000483.79E-10104168No hitNo description
SMARTSM003582.0E-7104171IPR014720Double-stranded RNA-binding domain
Gene3DG3DSA:3.30.160.209.7E-16104168IPR014720Double-stranded RNA-binding domain
PfamPF000351.2E-9105168IPR014720Double-stranded RNA-binding domain
PROSITE profilePS5013711.965189257IPR014720Double-stranded RNA-binding domain
CDDcd000487.78E-18190255No hitNo description
SuperFamilySSF547681.19E-18190257No hitNo description
PfamPF000353.2E-14190254IPR014720Double-stranded RNA-binding domain
SMARTSM003587.2E-18190256IPR014720Double-stranded RNA-binding domain
Gene3DG3DSA:3.30.160.203.9E-20190256IPR014720Double-stranded RNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEKNFTKKLN DIDIERRLLL SENCIKDFPR GHEAYLKFKD EDGQVWTFRC RVPPGGGSKP  60
ALSGDWFVFV RSKHLKVGDV IEIALDREKD QAGGEQFTIK FGLFKNQLQE LAQRSCFNLS  120
ACACIGEGPD RAPRFKASVD FNGEIFESPS YCTTLRQAEH AAAEVALNVW SSRGPARSLT  180
ARVLDETGIY KNLLQETAHR AGLNLPAYTT VRSGPGHVPV FTCTVELAGM NFTGEPATTK  240
KQAEKNAAIS AWSALKRSTN LIPHFLFILI VNYIICIICI IKQVRTLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2n3f_A3e-301032564149Double-stranded RNA-binding protein 4
2n3g_A3e-301032564149Double-stranded RNA-binding protein 4
2n3h_A3e-301032564149Double-stranded RNA-binding protein 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds double-stranded RNA. May be involved in RNA-mediated silencing. {ECO:0000269|PubMed:15821876}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139261e-138AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141001e-138AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.10.0PREDICTED: double-stranded RNA-binding protein 3-like
SwissprotQ8GY794e-86DRB5_ARATH; Double-stranded RNA-binding protein 5
TrEMBLA0A385JHK74e-99A0A385JHK7_POPTO; Double-stranded-RNA-binding protein 5
TrEMBLU5FM354e-99U5FM35_POPTR; Uncharacterized protein
STRINGPOPTR_0017s09580.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527
Publications ? help Back to Top
  1. Hiraguri A, et al.
    Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana.
    Plant Mol. Biol., 2005. 57(2): p. 173-88
    [PMID:15821876]
  2. Vazquez F
    Arabidopsis endogenous small RNAs: highways and byways.
    Trends Plant Sci., 2006. 11(9): p. 460-8
    [PMID:16893673]
  3. Curtin SJ, et al.
    The roles of plant dsRNA-binding proteins in RNAi-like pathways.
    FEBS Lett., 2008. 582(18): p. 2753-60
    [PMID:18625233]
  4. Eamens AL,Wook Kim K,Waterhouse PM
    DRB2, DRB3 and DRB5 function in a non-canonical microRNA pathway in Arabidopsis thaliana.
    Plant Signal Behav, 2012. 7(10): p. 1224-9
    [PMID:22902697]
  5. Barton DA, et al.
    Live Cell Imaging Reveals the Relocation of dsRNA Binding Proteins Upon Viral Infection.
    Mol. Plant Microbe Interact., 2017. 30(6): p. 435-443
    [PMID:28296575]