PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012143.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28020.9 Da    PI: 8.8493
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012143.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.1e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e++s
  CCG012143.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCS 59
                 79***********************************************96 PP

2K-box95.96.5e-32821739100
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + +++ es+++e+ k+k++ e+Lqr+qR+llGedL++L+ keL+qLe++Le+slk++Rs+K++++l+q+ +lq+ke++l e+n+aL++kl+e
  CCG012143.1  82 KPAKELESSYREYLKVKAKFETLQRTQRNLLGEDLGPLNTKELEQLERHLESSLKQVRSTKTQYMLDQLGDLQNKEHMLLEANRALTMKLDE 173
                  5677899**********************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.137161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-33276IPR002100Transcription factor, MADS-box
CDDcd002659.50E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-32323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-2685171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.95287177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLFEFCST  60
SNMLKTLERY QKCSYGADEV NKPAKELESS YREYLKVKAK FETLQRTQRN LLGEDLGPLN  120
TKELEQLERH LESSLKQVRS TKTQYMLDQL GDLQNKEHML LEANRALTMK LDEISARNNL  180
RPSWEGDDQQ SMSYGHQHAQ SQGLFQHLEC NPTLQIGYNS VGSDQITAAH AAQQVHGFIP  240
GWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-35751711101Developmental protein SEPALLATA 3
4ox0_B3e-35751711101Developmental protein SEPALLATA 3
4ox0_C3e-35751711101Developmental protein SEPALLATA 3
4ox0_D3e-35751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7893980.0DQ789398.1 Populus tomentosa MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014957.10.0PREDICTED: developmental protein SEPALLATA 2-like
RefseqXP_011014958.10.0PREDICTED: developmental protein SEPALLATA 2-like
RefseqXP_011014959.10.0PREDICTED: developmental protein SEPALLATA 2-like
SwissprotQ8LLR21e-146MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2K1X5T51e-179A0A2K1X5T5_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_14.2221e-154(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-134MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]