PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG012143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28020.9 Da PI: 8.8493 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.6 | 5.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e++s CCG012143.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 95.9 | 6.5e-32 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++ es+++e+ k+k++ e+Lqr+qR+llGedL++L+ keL+qLe++Le+slk++Rs+K++++l+q+ +lq+ke++l e+n+aL++kl+e CCG012143.1 82 KPAKELESSYREYLKVKAKFETLQRTQRNLLGEDLGPLNTKELEQLERHLESSLKQVRSTKTQYMLDQLGDLQNKEHMLLEANRALTMKLDE 173 5677899**********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-33 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.50E-45 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.3E-26 | 85 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.952 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLFEFCST 60 SNMLKTLERY QKCSYGADEV NKPAKELESS YREYLKVKAK FETLQRTQRN LLGEDLGPLN 120 TKELEQLERH LESSLKQVRS TKTQYMLDQL GDLQNKEHML LEANRALTMK LDEISARNNL 180 RPSWEGDDQQ SMSYGHQHAQ SQGLFQHLEC NPTLQIGYNS VGSDQITAAH AAQQVHGFIP 240 GWML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 3e-35 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-35 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-35 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-35 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ789398 | 0.0 | DQ789398.1 Populus tomentosa MADS4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014957.1 | 0.0 | PREDICTED: developmental protein SEPALLATA 2-like | ||||
Refseq | XP_011014958.1 | 0.0 | PREDICTED: developmental protein SEPALLATA 2-like | ||||
Refseq | XP_011014959.1 | 0.0 | PREDICTED: developmental protein SEPALLATA 2-like | ||||
Swissprot | Q8LLR2 | 1e-146 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A2K1X5T5 | 1e-179 | A0A2K1X5T5_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_14.222 | 1e-154 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-134 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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