PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011860.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 346aa    MW: 37487.6 Da    PI: 6.5013
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011860.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.75.5e-09436436
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                 + C+ +++  ++lfC+ ++ +lC +C +++H  
  CCG011860.1  4 KLCDSCKSATATLFCRADSAFLCVSCDSKIHAA 36
                 58*****************************54 PP
2zf-B_box27.56.4e-094691342
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  CCG011860.1 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplaqrHERVPV 91
                 689*****************************66899999999986 PP
3CCT69.11.1e-23283326144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  CCG011860.1 283 REARVLRYREKRKNRKFEKTIRYASRKAYAEKRPRIKGRFAKRT 326
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.808148IPR000315B-box-type zinc finger
SMARTSM003361.1E-14148IPR000315B-box-type zinc finger
PfamPF006431.3E-6443IPR000315B-box-type zinc finger
CDDcd000218.19E-10548No hitNo description
PROSITE profilePS5011910.8224491IPR000315B-box-type zinc finger
PfamPF006432.8E-74691IPR000315B-box-type zinc finger
CDDcd000211.53E-94791No hitNo description
SMARTSM003362.8E-104991IPR000315B-box-type zinc finger
PfamPF062031.2E-17283325IPR010402CCT domain
PROSITE profilePS5101716.807283325IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCVSCD SKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLAQRHERVP VTPFFDSSSA AHGGGDAVNF LEYRYLDDVN  120
GGDDVSREEA EAESWLLPNP GGGNTKGVDS VDLNTGQYVF GAEMHPYLDL DRYVDQKVEV  180
QEQNSSGTTD GVVPVQSNKL GFQAPALVND NCCFELDFSA GSKAFAGGYG YNSLSHSVSS  240
SSLDVGVVPD GSALTDISNP YSRSVSNGME SANQTVQLSA GDREARVLRY REKRKNRKFE  300
KTIRYASRKA YAEKRPRIKG RFAKRTDSGV EVDRSSIYGF GVVPSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485090.0EF148509.1 Populus trichocarpa x Populus deltoides clone WS0131_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031404.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-135COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLB9HB920.0B9HB92_POPTR; Co-like family protein
STRINGPOPTR_0006s28350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-132CONSTANS-like 4