PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011807.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 670aa    MW: 74393.5 Da    PI: 6.9699
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011807.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2391.9e-12328384155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  CCG011807.1 328 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 384
                  78*******************87776664446655.77******************98 PP
2AP2461.3e-14427478155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CCG011807.1 427 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 478
                  57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.64E-17328392No hitNo description
SuperFamilySSF541711.37E-12328392IPR016177DNA-binding domain
PfamPF008471.3E-9328384IPR001471AP2/ERF domain
PROSITE profilePS5103216.66329392IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-10329392IPR001471AP2/ERF domain
SMARTSM003804.0E-20329398IPR001471AP2/ERF domain
PRINTSPR003674.0E-6330341IPR001471AP2/ERF domain
CDDcd000181.67E-25427488No hitNo description
PfamPF008475.4E-10427478IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17427487IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-18428486IPR001471AP2/ERF domain
SMARTSM003801.3E-34428492IPR001471AP2/ERF domain
PROSITE profilePS5103219.032428486IPR001471AP2/ERF domain
PRINTSPR003674.0E-6468488IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MKSMNNDDGN NNHNADWLGF SLSPQMNMEV PSGTDHHQQT RSASAAVPTA IPTNLFHSQL  60
PHLNCGIYYG VEGENGGFYS PLHVMPLRSD GSPCMMDALT RTQPQATMVT TSTPKLEDFF  120
VGATMGTHHY ESNDREAMAL SLDSSTTMYY HQDTDHEPNN QICLNQLEQN PRQQHHHHIQ  180
VQQYPYYSNF RNNEMSGGED AKQMTQASDC SLLLPNMGDD GITGMKNWVS RNHQSNHVME  240
QKMLRCVVEN GGDSGPNISA MTYGDLQCLS LSMSPGSQSS CVTGTSQQIS PPVTDCAAIE  300
TKKRGPGKGD QKQIVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQSRKG  360
RQGGYDMEEK AARAYDLAAL KYWGPSTHIN SPLENYQKEI EEMKSMTRQE YVAHLRRKSS  420
GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD VAAIKFRGVS  480
AVTNFDITRY DVERIMASNT LLAGELARRN KDIGPCNDAT TDHNPSTRKS ENESDWKMVF  540
CQSSQQLDHK ASNAVDNYKT QAFSLSPENV IANDSIFSPH QQQVEDSSKM GTHMSNSSSL  600
VTSLCSSREG SPDRANLPVL FGMPPSAASK LYTSPICDVN SWIPTAAAAQ LRPAAVSLPH  660
IPVFAAWTDA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105550.0AC210555.1 Populus trichocarpa clone POP104-J03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031326.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2
TrEMBLA0A2K1ZM010.0A0A2K1ZM01_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-131AP2 family protein