PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011786.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 293aa MW: 31963 Da PI: 10.7384

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011786.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.2	2.8e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI R+ ++k++w++ CCG011786.1 5 KQKWTAEEEAALKAGVLKHGTGKWRTILVDPEfsavlRLRSNVDLKDKWRN 55 79*********************************99*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.268	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.06E-15	2	63	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-12	4	56	IPR009057	Homeodomain-like
SMART	SM00717	9.2E-6	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-7	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	6.82E-16	6	57	No hit	No description
SMART	SM00526	5.5E-10	116	182	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	19.316	119	187	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	7.07E-15	122	196	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.0E-13	123	189	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.8E-8	124	180	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRT ILVDPEFSAV LRLRSNVDLK DKWRNINVTA 60 IWGSRKKAKI ALKRRPLTPK REENAKALST VVQTNEEVVD AKPLAFASGT PGNGGPKDLL 120 ARLDNLILEA ITTLKEPTGS DRASIALYIQ EKYWAPMNLR KILGGKLKHL TANGNLIMVQ 180 HKYRIAPSST FSEGRKNHAL PEGKRKDALK LEKSKNKILT KAHVGRDPSK IQGMTALEAA 240 ASAAKAVAEA ESAIADAEAA AREAEKAEAE AEAAQVFAKA AMKAFKLRAR HTW

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148459	0.0	EF148459.1 Populus trichocarpa x Populus deltoides clone WS01315_H07 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031291.1	0.0	PREDICTED: telomere repeat-binding factor 2 isoform X2
Swissprot	Q9FJW5	4e-75	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	A0A2K1ZLY4	1e-175	A0A2K1ZLY4_POPTR; Uncharacterized protein
STRING	POPTR_0007s14920.1	1e-175	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	2e-69	MYB_related family protein

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]