PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011685.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 478aa    MW: 51833.7 Da    PI: 8.1898
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011685.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.98.8e-39882402134
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssas 83 
                   g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ ai el+++                +          s+s +  
  CCG011685.1  88 SGGKDRHSKVWTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAQDAINELPSLnhsfpetpkqlsdekrT----------SDSTE-- 173
                  689*************************************************************76554333322222210..........11111.. PP

          TCP  84 nsssg...................kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                      +                    + +++a+s+ s++s+ s l+l++  sr kar+rarert++++ ++n
  CCG011685.1 174 ----QgfdsadveledlnfrqnqnLSLSKSACSSTSETSKGSGLSLSRsVSRDKARERARERTAKEKEKEN 240
                  ....122233455555555555557778888999999999999*****9************9999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.7E-4389238IPR005333Transcription factor, TCP
PROSITE profilePS5136931.9190148IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.251218236IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEAEEIRRQP CKFTRVGNGI NDTSRIAQKG NGSDHQYPDD EEDGELKRTN SNNGAGCGGG  60
GIDAAGGTFN GLRAWHHSSR IIRVSRASGG KDRHSKVWTS KGLRDRRVRL SVSTAIQFYD  120
LQDRLGYDQP SKAVEWLIKA AQDAINELPS LNHSFPETPK QLSDEKRTSD STEQGFDSAD  180
VELEDLNFRQ NQNLSLSKSA CSSTSETSKG SGLSLSRSVS RDKARERARE RTAKEKEKEN  240
DSRIAHHHNI NPISQNSTFT ELLTGGVGSV RNNSSSNNNN NSTASPTGSD ANNLFQKAVA  300
ARQWPSTPMD CFGSGLLGPS SSRSTHHSSG FPGQIQLGNS IPQAMTMSIP PFCVSGENHQ  360
EHLQHFPFVS DHLIPVAATT QPPASSRDYN LNFTISSGLA AGFNRGTLQS NSSSPSLLPH  420
LQRFSTSSTI DGSTTNVPFF IGAATPQAME NHHQFPPGLQ LCYGDGTRHS DQKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2595149155Putative transcription factor PCF6
5zkt_B8e-2595149155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014905.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_011014906.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_011014907.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A2K1YHA50.0A0A2K1YHA5_POPTR; Uncharacterized protein
STRINGPOPTR_0011s02350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2