PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 610aa MW: 68104.1 Da PI: 6.8928 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.3 | 2.4e-29 | 65 | 149 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+ m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++ ++ +t+++fdqlea CCG011425.1 65 RWPRQETLALLKIRSGMDVAFRDASVKGPLWEEVSRKLAELGYNRSAKKCKEKFENVYKYHKRTKDGRTGK--QEGKTYRFFDQLEA 149 8********************************************************************96..45557*******85 PP | |||||||
2 | trihelix | 100.6 | 1.2e-31 | 435 | 520 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a CCG011425.1 435 RWPKVEVEALIRIRTNLDCKYQDNGPKGPLWEEISASMRKLGYNRNAKRCKEKWENINKYFKKVKESKKRR-PEDSKTCPYFQQLDA 520 8********************************************************************97.9************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.911 | 58 | 122 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0063 | 62 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.7E-18 | 64 | 149 | No hit | No description |
CDD | cd12203 | 9.83E-25 | 64 | 129 | No hit | No description |
SMART | SM00717 | 0.14 | 432 | 494 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.108 | 434 | 492 | IPR017877 | Myb-like domain |
CDD | cd12203 | 5.77E-27 | 434 | 499 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-4 | 434 | 491 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.1E-22 | 435 | 521 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MLGDSSSVLA TTTTTPGGGG GGGGAGGHKE APPLTGGHHE GSSNDVGGEE DKGKIEGDRS 60 YGGSRWPRQE TLALLKIRSG MDVAFRDASV KGPLWEEVSR KLAELGYNRS AKKCKEKFEN 120 VYKYHKRTKD GRTGKQEGKT YRFFDQLEAF ESHPSSLSSP LPLPPQQSKA PTPAVTATVM 180 QMVNPSPNIF RASHSTVPST AAATLATNMS QGIVPSAINL TVPPFPSTNP TILPPSQATN 240 PTNPPHTNIS PSFPNFSSDL ISNSTSSSTS SDVELQERCK RKRKWKDFFE RLMKEVIQKQ 300 EEMQKKFLEA IERLEHERMV REESWRMQEM TRINRESEIL AQERSVAASK NAEVMAFLQK 360 LSEEQHPGQI QNNPPPSQPP RPPGRPPILQ LVPTPPPPPP LQGAQAPLPQ AVANVDMIMK 420 SDNGDQNFTS ASPSRWPKVE VEALIRIRTN LDCKYQDNGP KGPLWEEISA SMRKLGYNRN 480 AKRCKEKWEN INKYFKKVKE SKKRRPEDSK TCPYFQQLDA LYKEKNKIDG PSNMKPENSV 540 PLMVRPEQQW PPPQHEHRPH SEMEDLESGD HQNHDDEDDK NMDDEDEDEV DEASGYEVVA 600 NKQTSMNTDG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU227602 | 0.0 | CU227602.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044212.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-143 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2K2AIZ6 | 0.0 | A0A2K2AIZ6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s21410.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-145 | Trihelix family protein |